Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5181 | 3' | -55 | NC_001798.1 | + | 2537 | 0.67 | 0.871126 |
Target: 5'- cGGGGcggGgGGCGcgGCCCCCGc-- -3' miRNA: 3'- uUCCCuuaUgUCGCuaCGGGGGCuug -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 2964 | 0.68 | 0.84518 |
Target: 5'- -cGGGGcgcgucggcGUGCGGCGggGCggccggcccgcgggCCCCGGGCg -3' miRNA: 3'- uuCCCU---------UAUGUCGCuaCG--------------GGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 11178 | 0.68 | 0.839386 |
Target: 5'- uGGGGGcgGUGgGGCGG-GCCUgCCGAACg -3' miRNA: 3'- uUCCCU--UAUgUCGCUaCGGG-GGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 14284 | 0.72 | 0.645075 |
Target: 5'- uGAGGGGG-ACGGCaaaGCCCCCGGAa -3' miRNA: 3'- -UUCCCUUaUGUCGcuaCGGGGGCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 15259 | 0.8 | 0.232604 |
Target: 5'- uGGGGGggUACgGGCGGUGCCCCggguucCGGGCg -3' miRNA: 3'- -UUCCCuuAUG-UCGCUACGGGG------GCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 15366 | 0.72 | 0.613719 |
Target: 5'- gGGGGGAAUcggccgugggcGCGGCGGaggcGCCCaCCGGACc -3' miRNA: 3'- -UUCCCUUA-----------UGUCGCUa---CGGG-GGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 23557 | 0.68 | 0.813493 |
Target: 5'- -cGGGggUGCccGCGAggGCCCCgGGGg -3' miRNA: 3'- uuCCCuuAUGu-CGCUa-CGGGGgCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 27195 | 0.71 | 0.68669 |
Target: 5'- cGGGGGGAgggGCGGgGGaaGCCCCCGGGg -3' miRNA: 3'- -UUCCCUUa--UGUCgCUa-CGGGGGCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 28860 | 0.67 | 0.882843 |
Target: 5'- cGAGGGcggccucggcCGGCGGaGCCCCgGAGCu -3' miRNA: 3'- -UUCCCuuau------GUCGCUaCGGGGgCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 30028 | 0.68 | 0.855678 |
Target: 5'- cGAGGGAG-GCAGgGAggaGCCCgaGAGCg -3' miRNA: 3'- -UUCCCUUaUGUCgCUa--CGGGggCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 31871 | 0.76 | 0.390274 |
Target: 5'- gGAGGGG--GCGGCGGcccGCCCCCGGAa -3' miRNA: 3'- -UUCCCUuaUGUCGCUa--CGGGGGCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 31976 | 0.66 | 0.905114 |
Target: 5'- cAGGGggUgggggccaagaggGCGGCGccGCgccgggCCCCGGACu -3' miRNA: 3'- uUCCCuuA-------------UGUCGCuaCG------GGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 36038 | 0.65 | 0.929075 |
Target: 5'- uGGGGggUgGCGGCGGuggucggcgUGCUgCCGGAg -3' miRNA: 3'- uUCCCuuA-UGUCGCU---------ACGGgGGCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 38136 | 0.7 | 0.707251 |
Target: 5'- gAAGGGAGUGCuGCGA-GUCCuuGuACa -3' miRNA: 3'- -UUCCCUUAUGuCGCUaCGGGggCuUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 39470 | 0.66 | 0.916147 |
Target: 5'- gGAGGGGGggccugGCGcgugccucguggccGCGG-GCCCCCGGAg -3' miRNA: 3'- -UUCCCUUa-----UGU--------------CGCUaCGGGGGCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 43024 | 0.65 | 0.929075 |
Target: 5'- cGGGGGGaGC-GCGG-GgCCCCGGGCg -3' miRNA: 3'- uUCCCUUaUGuCGCUaCgGGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 43334 | 0.71 | 0.68669 |
Target: 5'- uGGGGGGcgGCAGUGccGCCCCCc-GCg -3' miRNA: 3'- -UUCCCUuaUGUCGCuaCGGGGGcuUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 47227 | 0.66 | 0.899299 |
Target: 5'- gAAGGGGugggcgugucGUugGGCG--GCCCCCGGc- -3' miRNA: 3'- -UUCCCU----------UAugUCGCuaCGGGGGCUug -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 49268 | 0.73 | 0.582492 |
Target: 5'- uGGGGGGAUGC-GCac-GUCCCCGAGCg -3' miRNA: 3'- -UUCCCUUAUGuCGcuaCGGGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 51099 | 0.68 | 0.813493 |
Target: 5'- cGGGGGAgaugGCgAGCGAagagccGCCCCCGcGCc -3' miRNA: 3'- uUCCCUUa---UG-UCGCUa-----CGGGGGCuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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