miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 3' -55 NC_001798.1 + 2537 0.67 0.871126
Target:  5'- cGGGGcggGgGGCGcgGCCCCCGc-- -3'
miRNA:   3'- uUCCCuuaUgUCGCuaCGGGGGCuug -5'
5181 3' -55 NC_001798.1 + 2964 0.68 0.84518
Target:  5'- -cGGGGcgcgucggcGUGCGGCGggGCggccggcccgcgggCCCCGGGCg -3'
miRNA:   3'- uuCCCU---------UAUGUCGCuaCG--------------GGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 11178 0.68 0.839386
Target:  5'- uGGGGGcgGUGgGGCGG-GCCUgCCGAACg -3'
miRNA:   3'- uUCCCU--UAUgUCGCUaCGGG-GGCUUG- -5'
5181 3' -55 NC_001798.1 + 14284 0.72 0.645075
Target:  5'- uGAGGGGG-ACGGCaaaGCCCCCGGAa -3'
miRNA:   3'- -UUCCCUUaUGUCGcuaCGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 15259 0.8 0.232604
Target:  5'- uGGGGGggUACgGGCGGUGCCCCggguucCGGGCg -3'
miRNA:   3'- -UUCCCuuAUG-UCGCUACGGGG------GCUUG- -5'
5181 3' -55 NC_001798.1 + 15366 0.72 0.613719
Target:  5'- gGGGGGAAUcggccgugggcGCGGCGGaggcGCCCaCCGGACc -3'
miRNA:   3'- -UUCCCUUA-----------UGUCGCUa---CGGG-GGCUUG- -5'
5181 3' -55 NC_001798.1 + 23557 0.68 0.813493
Target:  5'- -cGGGggUGCccGCGAggGCCCCgGGGg -3'
miRNA:   3'- uuCCCuuAUGu-CGCUa-CGGGGgCUUg -5'
5181 3' -55 NC_001798.1 + 27195 0.71 0.68669
Target:  5'- cGGGGGGAgggGCGGgGGaaGCCCCCGGGg -3'
miRNA:   3'- -UUCCCUUa--UGUCgCUa-CGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 28860 0.67 0.882843
Target:  5'- cGAGGGcggccucggcCGGCGGaGCCCCgGAGCu -3'
miRNA:   3'- -UUCCCuuau------GUCGCUaCGGGGgCUUG- -5'
5181 3' -55 NC_001798.1 + 30028 0.68 0.855678
Target:  5'- cGAGGGAG-GCAGgGAggaGCCCgaGAGCg -3'
miRNA:   3'- -UUCCCUUaUGUCgCUa--CGGGggCUUG- -5'
5181 3' -55 NC_001798.1 + 31871 0.76 0.390274
Target:  5'- gGAGGGG--GCGGCGGcccGCCCCCGGAa -3'
miRNA:   3'- -UUCCCUuaUGUCGCUa--CGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 31976 0.66 0.905114
Target:  5'- cAGGGggUgggggccaagaggGCGGCGccGCgccgggCCCCGGACu -3'
miRNA:   3'- uUCCCuuA-------------UGUCGCuaCG------GGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 36038 0.65 0.929075
Target:  5'- uGGGGggUgGCGGCGGuggucggcgUGCUgCCGGAg -3'
miRNA:   3'- uUCCCuuA-UGUCGCU---------ACGGgGGCUUg -5'
5181 3' -55 NC_001798.1 + 38136 0.7 0.707251
Target:  5'- gAAGGGAGUGCuGCGA-GUCCuuGuACa -3'
miRNA:   3'- -UUCCCUUAUGuCGCUaCGGGggCuUG- -5'
5181 3' -55 NC_001798.1 + 39470 0.66 0.916147
Target:  5'- gGAGGGGGggccugGCGcgugccucguggccGCGG-GCCCCCGGAg -3'
miRNA:   3'- -UUCCCUUa-----UGU--------------CGCUaCGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 43024 0.65 0.929075
Target:  5'- cGGGGGGaGC-GCGG-GgCCCCGGGCg -3'
miRNA:   3'- uUCCCUUaUGuCGCUaCgGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 43334 0.71 0.68669
Target:  5'- uGGGGGGcgGCAGUGccGCCCCCc-GCg -3'
miRNA:   3'- -UUCCCUuaUGUCGCuaCGGGGGcuUG- -5'
5181 3' -55 NC_001798.1 + 47227 0.66 0.899299
Target:  5'- gAAGGGGugggcgugucGUugGGCG--GCCCCCGGc- -3'
miRNA:   3'- -UUCCCU----------UAugUCGCuaCGGGGGCUug -5'
5181 3' -55 NC_001798.1 + 49268 0.73 0.582492
Target:  5'- uGGGGGGAUGC-GCac-GUCCCCGAGCg -3'
miRNA:   3'- -UUCCCUUAUGuCGcuaCGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 51099 0.68 0.813493
Target:  5'- cGGGGGAgaugGCgAGCGAagagccGCCCCCGcGCc -3'
miRNA:   3'- uUCCCUUa---UG-UCGCUa-----CGGGGGCuUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.