miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 3' -55 NC_001798.1 + 103668 1.06 0.004538
Target:  5'- cAAGGGAAUACAGCGAUGCCCCCGAACc -3'
miRNA:   3'- -UUCCCUUAUGUCGCUACGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 15259 0.8 0.232604
Target:  5'- uGGGGGggUACgGGCGGUGCCCCggguucCGGGCg -3'
miRNA:   3'- -UUCCCuuAUG-UCGCUACGGGG------GCUUG- -5'
5181 3' -55 NC_001798.1 + 31871 0.76 0.390274
Target:  5'- gGAGGGG--GCGGCGGcccGCCCCCGGAa -3'
miRNA:   3'- -UUCCCUuaUGUCGCUa--CGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 73073 0.74 0.511238
Target:  5'- gGGGGGAcUACAGCcuGggGCCCCUGggUc -3'
miRNA:   3'- -UUCCCUuAUGUCG--CuaCGGGGGCuuG- -5'
5181 3' -55 NC_001798.1 + 125520 0.73 0.572148
Target:  5'- aAAGGGAcgcGCAGCGcAUcGCCgCCGAGCg -3'
miRNA:   3'- -UUCCCUua-UGUCGC-UA-CGGgGGCUUG- -5'
5181 3' -55 NC_001798.1 + 49268 0.73 0.582492
Target:  5'- uGGGGGGAUGC-GCac-GUCCCCGAGCg -3'
miRNA:   3'- -UUCCCUUAUGuCGcuaCGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 78259 0.72 0.592874
Target:  5'- -cGGGcgcucgGCGGCG-UGCCCCUGGACc -3'
miRNA:   3'- uuCCCuua---UGUCGCuACGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 15366 0.72 0.613719
Target:  5'- gGGGGGAAUcggccgugggcGCGGCGGaggcGCCCaCCGGACc -3'
miRNA:   3'- -UUCCCUUA-----------UGUCGCUa---CGGG-GGCUUG- -5'
5181 3' -55 NC_001798.1 + 14284 0.72 0.645075
Target:  5'- uGAGGGGG-ACGGCaaaGCCCCCGGAa -3'
miRNA:   3'- -UUCCCUUaUGUCGcuaCGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 27195 0.71 0.68669
Target:  5'- cGGGGGGAgggGCGGgGGaaGCCCCCGGGg -3'
miRNA:   3'- -UUCCCUUa--UGUCgCUa-CGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 43334 0.71 0.68669
Target:  5'- uGGGGGGcgGCAGUGccGCCCCCc-GCg -3'
miRNA:   3'- -UUCCCUuaUGUCGCuaCGGGGGcuUG- -5'
5181 3' -55 NC_001798.1 + 152808 0.71 0.696999
Target:  5'- cGAGGGAGUaauuacgcggGgAGCGAgggGCCgUCCGAACg -3'
miRNA:   3'- -UUCCCUUA----------UgUCGCUa--CGG-GGGCUUG- -5'
5181 3' -55 NC_001798.1 + 129359 0.71 0.696999
Target:  5'- -cGGGcc--UGGCGggGCCCCCGGACc -3'
miRNA:   3'- uuCCCuuauGUCGCuaCGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 38136 0.7 0.707251
Target:  5'- gAAGGGAGUGCuGCGA-GUCCuuGuACa -3'
miRNA:   3'- -UUCCCUUAUGuCGCUaCGGGggCuUG- -5'
5181 3' -55 NC_001798.1 + 126621 0.7 0.726539
Target:  5'- cGGGGGggUACGGCGAggUGCaguugauUCgCGAACa -3'
miRNA:   3'- -UUCCCuuAUGUCGCU--ACG-------GGgGCUUG- -5'
5181 3' -55 NC_001798.1 + 71393 0.7 0.727547
Target:  5'- gGAGGGGuuuuuggugGCGGgGGUGCCCgCgCGGACg -3'
miRNA:   3'- -UUCCCUua-------UGUCgCUACGGG-G-GCUUG- -5'
5181 3' -55 NC_001798.1 + 124077 0.7 0.727547
Target:  5'- -cGGGAGgagGCGGCGccUGCgCCCCGAc- -3'
miRNA:   3'- uuCCCUUa--UGUCGCu-ACG-GGGGCUug -5'
5181 3' -55 NC_001798.1 + 76344 0.7 0.727547
Target:  5'- -cGGGGc--CAGCcccuaGAUGCCCCCGAGg -3'
miRNA:   3'- uuCCCUuauGUCG-----CUACGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 130529 0.7 0.727547
Target:  5'- --cGGug-GCGGCGAUGgCCCCGAGg -3'
miRNA:   3'- uucCCuuaUGUCGCUACgGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 99910 0.7 0.751441
Target:  5'- -cGGGAGUACAuGCGGgagcaggaccgcaaGCCCCgGAAUg -3'
miRNA:   3'- uuCCCUUAUGU-CGCUa-------------CGGGGgCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.