miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 3' -55 NC_001798.1 + 154116 0.67 0.878518
Target:  5'- cGGGGAccccgGCGGCGggGaCCCCGGcgGCg -3'
miRNA:   3'- uUCCCUua---UGUCGCuaCgGGGGCU--UG- -5'
5181 3' -55 NC_001798.1 + 152808 0.71 0.696999
Target:  5'- cGAGGGAGUaauuacgcggGgAGCGAgggGCCgUCCGAACg -3'
miRNA:   3'- -UUCCCUUA----------UgUCGCUa--CGG-GGGCUUG- -5'
5181 3' -55 NC_001798.1 + 152098 0.68 0.838549
Target:  5'- cGGGGGucgGCcccgucaAGCGuccccGCCCCCGAGCc -3'
miRNA:   3'- uUCCCUua-UG-------UCGCua---CGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 150956 0.66 0.899299
Target:  5'- aGAGGGAG-ACAGagacgGGaGCCCCCGGu- -3'
miRNA:   3'- -UUCCCUUaUGUCg----CUaCGGGGGCUug -5'
5181 3' -55 NC_001798.1 + 150419 0.68 0.822307
Target:  5'- cGGGGGcgGCGGCGgcGCggggcggaCUCCGGACg -3'
miRNA:   3'- uUCCCUuaUGUCGCuaCG--------GGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 146430 0.68 0.839386
Target:  5'- -cGGGcagAguGCGGaGCCCCCGGAg -3'
miRNA:   3'- uuCCCuuaUguCGCUaCGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 138139 0.66 0.923616
Target:  5'- -uGGcGAAgcUGCuGCGGUcgcGCCCCCGggUc -3'
miRNA:   3'- uuCC-CUU--AUGuCGCUA---CGGGGGCuuG- -5'
5181 3' -55 NC_001798.1 + 132886 0.68 0.830941
Target:  5'- cGGGGGAUACAuuuUGAUGCCCUgaGGGCc -3'
miRNA:   3'- uUCCCUUAUGUc--GCUACGGGGg-CUUG- -5'
5181 3' -55 NC_001798.1 + 132149 0.66 0.917908
Target:  5'- cGGGGGccgGCgGGCGGggcgcccCCCCCGGACg -3'
miRNA:   3'- uUCCCUua-UG-UCGCUac-----GGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 130529 0.7 0.727547
Target:  5'- --cGGug-GCGGCGAUGgCCCCGAGg -3'
miRNA:   3'- uucCCuuaUGUCGCUACgGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 129359 0.71 0.696999
Target:  5'- -cGGGcc--UGGCGggGCCCCCGGACc -3'
miRNA:   3'- uuCCCuuauGUCGCuaCGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 126621 0.7 0.726539
Target:  5'- cGGGGGggUACGGCGAggUGCaguugauUCgCGAACa -3'
miRNA:   3'- -UUCCCuuAUGUCGCU--ACG-------GGgGCUUG- -5'
5181 3' -55 NC_001798.1 + 125520 0.73 0.572148
Target:  5'- aAAGGGAcgcGCAGCGcAUcGCCgCCGAGCg -3'
miRNA:   3'- -UUCCCUua-UGUCGC-UA-CGGgGGCUUG- -5'
5181 3' -55 NC_001798.1 + 124077 0.7 0.727547
Target:  5'- -cGGGAGgagGCGGCGccUGCgCCCCGAc- -3'
miRNA:   3'- uuCCCUUa--UGUCGCu-ACG-GGGGCUug -5'
5181 3' -55 NC_001798.1 + 122703 0.67 0.862737
Target:  5'- uAGGGGAGgugacGCGGCGcuuccccGUGCUCCUGGAg -3'
miRNA:   3'- -UUCCCUUa----UGUCGC-------UACGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 122113 0.68 0.839386
Target:  5'- cGGGGGGcgcuuUGCcAGcCGGggggGCCCCCGGGCc -3'
miRNA:   3'- -UUCCCUu----AUG-UC-GCUa---CGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 113762 0.67 0.878518
Target:  5'- cGGGGGggUauuaaggcagggGCAGCuc-GCCCCCGuGCc -3'
miRNA:   3'- -UUCCCuuA------------UGUCGcuaCGGGGGCuUG- -5'
5181 3' -55 NC_001798.1 + 111346 0.66 0.905748
Target:  5'- cGGGGAAgggggACAuGCGccGCUCCCGGu- -3'
miRNA:   3'- uUCCCUUa----UGU-CGCuaCGGGGGCUug -5'
5181 3' -55 NC_001798.1 + 110382 0.67 0.88568
Target:  5'- cAGGGGc--CGGUGGcggGCaCCCCGAACg -3'
miRNA:   3'- uUCCCUuauGUCGCUa--CG-GGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 107430 0.67 0.878518
Target:  5'- -cGGGggUcgccGCGGCGAccccGCgCCCCGAc- -3'
miRNA:   3'- uuCCCuuA----UGUCGCUa---CG-GGGGCUug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.