Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5181 | 3' | -55 | NC_001798.1 | + | 53044 | 0.68 | 0.813493 |
Target: 5'- -cGGGAcgcggcAUACcuccgaccGGCGggGCCCCCGAc- -3' miRNA: 3'- uuCCCU------UAUG--------UCGCuaCGGGGGCUug -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 59001 | 0.68 | 0.838549 |
Target: 5'- gGGGGGGGcGCGGaggaaccccaggcCGGUGCUCCCGAucACg -3' miRNA: 3'- -UUCCCUUaUGUC-------------GCUACGGGGGCU--UG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 71393 | 0.7 | 0.727547 |
Target: 5'- gGAGGGGuuuuuggugGCGGgGGUGCCCgCgCGGACg -3' miRNA: 3'- -UUCCCUua-------UGUCgCUACGGG-G-GCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 72332 | 0.69 | 0.786056 |
Target: 5'- cGGGGggUGCuGCaGGaGCUCgCCGAGCg -3' miRNA: 3'- uUCCCuuAUGuCG-CUaCGGG-GGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 73073 | 0.74 | 0.511238 |
Target: 5'- gGGGGGAcUACAGCcuGggGCCCCUGggUc -3' miRNA: 3'- -UUCCCUuAUGUCG--CuaCGGGGGCuuG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 73257 | 0.68 | 0.82837 |
Target: 5'- cGGGGAccuggaggcccaagAUGcCGGCGGUagcaCCCCCGAACc -3' miRNA: 3'- uUCCCU--------------UAU-GUCGCUAc---GGGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 75133 | 0.69 | 0.767028 |
Target: 5'- cAGGGcg-GCGGCGAcgacggGCCCgCGAGCc -3' miRNA: 3'- uUCCCuuaUGUCGCUa-----CGGGgGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 76344 | 0.7 | 0.727547 |
Target: 5'- -cGGGGc--CAGCcccuaGAUGCCCCCGAGg -3' miRNA: 3'- uuCCCUuauGUCG-----CUACGGGGGCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 76986 | 0.65 | 0.929075 |
Target: 5'- uGGGGcAGUACcGgGAgGCCCUgGAACa -3' miRNA: 3'- uUCCC-UUAUGuCgCUaCGGGGgCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 78259 | 0.72 | 0.592874 |
Target: 5'- -cGGGcgcucgGCGGCG-UGCCCCUGGACc -3' miRNA: 3'- uuCCCuua---UGUCGCuACGGGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 84846 | 0.66 | 0.899299 |
Target: 5'- -cGGGAAUAuaaccucuaguuCGGCGGgggucaUGUCCUCGAACc -3' miRNA: 3'- uuCCCUUAU------------GUCGCU------ACGGGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 85669 | 0.66 | 0.917908 |
Target: 5'- --cGGAccgACGGCGggGUgCCCGGGCg -3' miRNA: 3'- uucCCUua-UGUCGCuaCGgGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 87387 | 0.66 | 0.917908 |
Target: 5'- gGAGGGGggGCGuGCGA--CCCCCGGu- -3' miRNA: 3'- -UUCCCUuaUGU-CGCUacGGGGGCUug -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 96697 | 0.7 | 0.761218 |
Target: 5'- -cGGGAGUuuaugguggcgGCGGUGGggucgggccucaucgUGCCCCCGGAg -3' miRNA: 3'- uuCCCUUA-----------UGUCGCU---------------ACGGGGGCUUg -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 97532 | 0.66 | 0.914364 |
Target: 5'- gGAGGGGGggcggaggcguggcGCGGgGAcGCCCgCGAGCg -3' miRNA: 3'- -UUCCCUUa-------------UGUCgCUaCGGGgGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 99910 | 0.7 | 0.751441 |
Target: 5'- -cGGGAGUACAuGCGGgagcaggaccgcaaGCCCCgGAAUg -3' miRNA: 3'- uuCCCUUAUGU-CGCUa-------------CGGGGgCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 102388 | 0.66 | 0.917908 |
Target: 5'- uGGcGGucgGCGGCGAUgGCCCCCa--- -3' miRNA: 3'- uUC-CCuuaUGUCGCUA-CGGGGGcuug -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 103668 | 1.06 | 0.004538 |
Target: 5'- cAAGGGAAUACAGCGAUGCCCCCGAACc -3' miRNA: 3'- -UUCCCUUAUGUCGCUACGGGGGCUUG- -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 107430 | 0.67 | 0.878518 |
Target: 5'- -cGGGggUcgccGCGGCGAccccGCgCCCCGAc- -3' miRNA: 3'- uuCCCuuA----UGUCGCUa---CG-GGGGCUug -5' |
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5181 | 3' | -55 | NC_001798.1 | + | 110382 | 0.67 | 0.88568 |
Target: 5'- cAGGGGc--CGGUGGcggGCaCCCCGAACg -3' miRNA: 3'- uUCCCUuauGUCGCUa--CG-GGGGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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