miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 3' -55 NC_001798.1 + 2537 0.67 0.871126
Target:  5'- cGGGGcggGgGGCGcgGCCCCCGc-- -3'
miRNA:   3'- uUCCCuuaUgUCGCuaCGGGGGCuug -5'
5181 3' -55 NC_001798.1 + 122703 0.67 0.862737
Target:  5'- uAGGGGAGgugacGCGGCGcuuccccGUGCUCCUGGAg -3'
miRNA:   3'- -UUCCCUUa----UGUCGC-------UACGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 30028 0.68 0.855678
Target:  5'- cGAGGGAG-GCAGgGAggaGCCCgaGAGCg -3'
miRNA:   3'- -UUCCCUUaUGUCgCUa--CGGGggCUUG- -5'
5181 3' -55 NC_001798.1 + 2964 0.68 0.84518
Target:  5'- -cGGGGcgcgucggcGUGCGGCGggGCggccggcccgcgggCCCCGGGCg -3'
miRNA:   3'- uuCCCU---------UAUGUCGCuaCG--------------GGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 11178 0.68 0.839386
Target:  5'- uGGGGGcgGUGgGGCGG-GCCUgCCGAACg -3'
miRNA:   3'- uUCCCU--UAUgUCGCUaCGGG-GGCUUG- -5'
5181 3' -55 NC_001798.1 + 122113 0.68 0.839386
Target:  5'- cGGGGGGcgcuuUGCcAGcCGGggggGCCCCCGGGCc -3'
miRNA:   3'- -UUCCCUu----AUG-UC-GCUa---CGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 146430 0.68 0.839386
Target:  5'- -cGGGcagAguGCGGaGCCCCCGGAg -3'
miRNA:   3'- uuCCCuuaUguCGCUaCGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 152098 0.68 0.838549
Target:  5'- cGGGGGucgGCcccgucaAGCGuccccGCCCCCGAGCc -3'
miRNA:   3'- uUCCCUua-UG-------UCGCua---CGGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 59001 0.68 0.838549
Target:  5'- gGGGGGGGcGCGGaggaaccccaggcCGGUGCUCCCGAucACg -3'
miRNA:   3'- -UUCCCUUaUGUC-------------GCUACGGGGGCU--UG- -5'
5181 3' -55 NC_001798.1 + 132886 0.68 0.830941
Target:  5'- cGGGGGAUACAuuuUGAUGCCCUgaGGGCc -3'
miRNA:   3'- uUCCCUUAUGUc--GCUACGGGGg-CUUG- -5'
5181 3' -55 NC_001798.1 + 73257 0.68 0.82837
Target:  5'- cGGGGAccuggaggcccaagAUGcCGGCGGUagcaCCCCCGAACc -3'
miRNA:   3'- uUCCCU--------------UAU-GUCGCUAc---GGGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 150419 0.68 0.822307
Target:  5'- cGGGGGcgGCGGCGgcGCggggcggaCUCCGGACg -3'
miRNA:   3'- uUCCCUuaUGUCGCuaCG--------GGGGCUUG- -5'
5181 3' -55 NC_001798.1 + 53044 0.68 0.813493
Target:  5'- -cGGGAcgcggcAUACcuccgaccGGCGggGCCCCCGAc- -3'
miRNA:   3'- uuCCCU------UAUG--------UCGCuaCGGGGGCUug -5'
5181 3' -55 NC_001798.1 + 51099 0.68 0.813493
Target:  5'- cGGGGGAgaugGCgAGCGAagagccGCCCCCGcGCc -3'
miRNA:   3'- uUCCCUUa---UG-UCGCUa-----CGGGGGCuUG- -5'
5181 3' -55 NC_001798.1 + 23557 0.68 0.813493
Target:  5'- -cGGGggUGCccGCGAggGCCCCgGGGg -3'
miRNA:   3'- uuCCCuuAUGu-CGCUa-CGGGGgCUUg -5'
5181 3' -55 NC_001798.1 + 72332 0.69 0.786056
Target:  5'- cGGGGggUGCuGCaGGaGCUCgCCGAGCg -3'
miRNA:   3'- uUCCCuuAUGuCG-CUaCGGG-GGCUUG- -5'
5181 3' -55 NC_001798.1 + 75133 0.69 0.767028
Target:  5'- cAGGGcg-GCGGCGAcgacggGCCCgCGAGCc -3'
miRNA:   3'- uUCCCuuaUGUCGCUa-----CGGGgGCUUG- -5'
5181 3' -55 NC_001798.1 + 96697 0.7 0.761218
Target:  5'- -cGGGAGUuuaugguggcgGCGGUGGggucgggccucaucgUGCCCCCGGAg -3'
miRNA:   3'- uuCCCUUA-----------UGUCGCU---------------ACGGGGGCUUg -5'
5181 3' -55 NC_001798.1 + 99910 0.7 0.751441
Target:  5'- -cGGGAGUACAuGCGGgagcaggaccgcaaGCCCCgGAAUg -3'
miRNA:   3'- uuCCCUUAUGU-CGCUa-------------CGGGGgCUUG- -5'
5181 3' -55 NC_001798.1 + 71393 0.7 0.727547
Target:  5'- gGAGGGGuuuuuggugGCGGgGGUGCCCgCgCGGACg -3'
miRNA:   3'- -UUCCCUua-------UGUCgCUACGGG-G-GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.