miRNA display CGI


Results 41 - 60 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 5' -59.9 NC_001798.1 + 77276 0.67 0.742616
Target:  5'- gCCGCCCGCGacccGGCCuCGCCccUGUccuuccucgcggUGCu -3'
miRNA:   3'- -GGUGGGUGCc---CCGG-GCGGcaACA------------ACG- -5'
5181 5' -59.9 NC_001798.1 + 85033 0.67 0.742616
Target:  5'- uCCGCCC-CGGGggugccgucgaGCgCCGCCGUgc--GCg -3'
miRNA:   3'- -GGUGGGuGCCC-----------CG-GGCGGCAacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 117838 0.67 0.742616
Target:  5'- aUCACCUcaACGGGGCCuCGCCc--GUccucagccccUGCu -3'
miRNA:   3'- -GGUGGG--UGCCCCGG-GCGGcaaCA----------ACG- -5'
5181 5' -59.9 NC_001798.1 + 135291 0.67 0.741681
Target:  5'- gCCGCCCccuCGgagcccuGGGCCCggGCCGUgcUGgaGCg -3'
miRNA:   3'- -GGUGGGu--GC-------CCCGGG--CGGCA--ACaaCG- -5'
5181 5' -59.9 NC_001798.1 + 42731 0.67 0.733227
Target:  5'- gCCACCgGcCGaGGGCCCGUCGccc--GCa -3'
miRNA:   3'- -GGUGGgU-GC-CCCGGGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 126585 0.67 0.733227
Target:  5'- cCCuggagauCCC-CGGGGCCCGCagcuucgGggGCu -3'
miRNA:   3'- -GGu------GGGuGCCCCGGGCGgcaa---CaaCG- -5'
5181 5' -59.9 NC_001798.1 + 122006 0.67 0.733227
Target:  5'- gUCGCCU-CGGGGCuCCGCCag-GgcGCc -3'
miRNA:   3'- -GGUGGGuGCCCCG-GGCGGcaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 135765 0.67 0.733227
Target:  5'- uCCuCCgGCGGccggccgccGGCCCGCCGgaGgagGCc -3'
miRNA:   3'- -GGuGGgUGCC---------CCGGGCGGCaaCaa-CG- -5'
5181 5' -59.9 NC_001798.1 + 68956 0.67 0.733227
Target:  5'- cCgGCCCGCGu--CCCGCCGUaGUUGg -3'
miRNA:   3'- -GgUGGGUGCcccGGGCGGCAaCAACg -5'
5181 5' -59.9 NC_001798.1 + 85306 0.67 0.730395
Target:  5'- uCCGCCCGCGGcccGCCCGCagaccccacgGCa -3'
miRNA:   3'- -GGUGGGUGCCc--CGGGCGgcaacaa---CG- -5'
5181 5' -59.9 NC_001798.1 + 25274 0.67 0.729449
Target:  5'- gCCAgCCGcCGGGGCCCaGCCacacgccgGCg -3'
miRNA:   3'- -GGUgGGU-GCCCCGGG-CGGcaacaa--CG- -5'
5181 5' -59.9 NC_001798.1 + 53611 0.67 0.724708
Target:  5'- gCGCCCcguucaagaGCGGGGCCgccgcggccaaguaCGCCGccgcgguggcgggGUUGCg -3'
miRNA:   3'- gGUGGG---------UGCCCCGG--------------GCGGCaa-----------CAACG- -5'
5181 5' -59.9 NC_001798.1 + 4194 0.67 0.723758
Target:  5'- cCCGCCCGCGGcguggucugcGGCgCUGgCGggGgcGCg -3'
miRNA:   3'- -GGUGGGUGCC----------CCG-GGCgGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 121784 0.67 0.723758
Target:  5'- uCCucgguCUCggGCGGGGCCgggccgGCCGUUGUcgGCa -3'
miRNA:   3'- -GGu----GGG--UGCCCCGGg-----CGGCAACAa-CG- -5'
5181 5' -59.9 NC_001798.1 + 26553 0.67 0.714216
Target:  5'- aCCG-CCGCGGGGCUggccaCGCCGccGagGCg -3'
miRNA:   3'- -GGUgGGUGCCCCGG-----GCGGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 91073 0.67 0.714216
Target:  5'- aCACCUuaGGGGCgCGCCGgaGgcgGCc -3'
miRNA:   3'- gGUGGGugCCCCGgGCGGCaaCaa-CG- -5'
5181 5' -59.9 NC_001798.1 + 152062 0.67 0.714216
Target:  5'- aCgGCCCACGGGGguccCCCGaCCGcuuaaGCg -3'
miRNA:   3'- -GgUGGGUGCCCC----GGGC-GGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 147200 0.67 0.714216
Target:  5'- cCCGCCCgGCGGuccGGCCCGggcccCCGgcGgaGCg -3'
miRNA:   3'- -GGUGGG-UGCC---CCGGGC-----GGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 127295 0.67 0.704609
Target:  5'- aCGCCC-UGGGGCagaCGCUGcUGgaGCu -3'
miRNA:   3'- gGUGGGuGCCCCGg--GCGGCaACaaCG- -5'
5181 5' -59.9 NC_001798.1 + 24817 0.67 0.704609
Target:  5'- gCGCCUgcGCGGGGaCCUGCgCGUggccgGCg -3'
miRNA:   3'- gGUGGG--UGCCCC-GGGCG-GCAacaa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.