miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 5' -59.9 NC_001798.1 + 62256 0.66 0.779194
Target:  5'- aCCGCCC-CGaGccgaucccaGGCCCGCCGg----GCg -3'
miRNA:   3'- -GGUGGGuGC-C---------CCGGGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 54682 0.66 0.779194
Target:  5'- cCCGCUCGCGGcucagcgcgaGG-CCGCCGggGUcuacgacgcggUGCg -3'
miRNA:   3'- -GGUGGGUGCC----------CCgGGCGGCaaCA-----------ACG- -5'
5181 5' -59.9 NC_001798.1 + 1811 0.66 0.778301
Target:  5'- gCugCCGCGagaccacGGGCCCGUCGgcgg-GCc -3'
miRNA:   3'- gGugGGUGC-------CCCGGGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 74263 0.66 0.777407
Target:  5'- cCUGCCCGCGGGaacGCCCG-CGUUuaucgccaaggUGCg -3'
miRNA:   3'- -GGUGGGUGCCC---CGGGCgGCAAca---------ACG- -5'
5181 5' -59.9 NC_001798.1 + 135374 0.66 0.770212
Target:  5'- gCUGCUCgGCGGGGUcauggCCGCCGUcUGccUGCa -3'
miRNA:   3'- -GGUGGG-UGCCCCG-----GGCGGCA-ACa-ACG- -5'
5181 5' -59.9 NC_001798.1 + 100833 0.66 0.770212
Target:  5'- uCCaACCCcuuCGGGGCgCuUGCCG-UGggGCu -3'
miRNA:   3'- -GG-UGGGu--GCCCCG-G-GCGGCaACaaCG- -5'
5181 5' -59.9 NC_001798.1 + 59256 0.66 0.770212
Target:  5'- cCCGCaCC-CGGGGCCCGaCGgcgcucucgGUgaagcUGCg -3'
miRNA:   3'- -GGUG-GGuGCCCCGGGCgGCaa-------CA-----ACG- -5'
5181 5' -59.9 NC_001798.1 + 135529 0.66 0.770212
Target:  5'- aCGCCCGCcGGGCCCucgaGgCGUccgUGCg -3'
miRNA:   3'- gGUGGGUGcCCCGGG----CgGCAacaACG- -5'
5181 5' -59.9 NC_001798.1 + 117448 0.66 0.761116
Target:  5'- cUCGgCCGCGGGGCCCccCCGc---UGCu -3'
miRNA:   3'- -GGUgGGUGCCCCGGGc-GGCaacaACG- -5'
5181 5' -59.9 NC_001798.1 + 117667 0.66 0.761116
Target:  5'- -aACCCGCGGGGacgcgCgGCCGgcGgcgUGUa -3'
miRNA:   3'- ggUGGGUGCCCCg----GgCGGCaaCa--ACG- -5'
5181 5' -59.9 NC_001798.1 + 4359 0.66 0.761116
Target:  5'- gCGCCgGCggGGGGCgCGCCGgcg--GCg -3'
miRNA:   3'- gGUGGgUG--CCCCGgGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 25209 0.66 0.761116
Target:  5'- gCCGcgcCCCGCGGcgcugacccgccGGCCCGCCGagg--GCc -3'
miRNA:   3'- -GGU---GGGUGCC------------CCGGGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 3827 0.66 0.7602
Target:  5'- uCCGCCU-CGGGcGCCCcccagagGCCGggGcgGCu -3'
miRNA:   3'- -GGUGGGuGCCC-CGGG-------CGGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 153170 0.66 0.751915
Target:  5'- -aGCUC-CGGGGCuCCGCCGgccgagGCc -3'
miRNA:   3'- ggUGGGuGCCCCG-GGCGGCaacaa-CG- -5'
5181 5' -59.9 NC_001798.1 + 31140 0.66 0.751915
Target:  5'- gCGCCCcggcGCGGGGgCgGCgGUgcgGggGCg -3'
miRNA:   3'- gGUGGG----UGCCCCgGgCGgCAa--CaaCG- -5'
5181 5' -59.9 NC_001798.1 + 54375 0.66 0.751915
Target:  5'- cCgGCCCACcggGGGGCCgCGgCGcgGUcgGCg -3'
miRNA:   3'- -GgUGGGUG---CCCCGG-GCgGCaaCAa-CG- -5'
5181 5' -59.9 NC_001798.1 + 85033 0.67 0.742616
Target:  5'- uCCGCCC-CGGGggugccgucgaGCgCCGCCGUgc--GCg -3'
miRNA:   3'- -GGUGGGuGCCC-----------CG-GGCGGCAacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 77276 0.67 0.742616
Target:  5'- gCCGCCCGCGacccGGCCuCGCCccUGUccuuccucgcggUGCu -3'
miRNA:   3'- -GGUGGGUGCc---CCGG-GCGGcaACA------------ACG- -5'
5181 5' -59.9 NC_001798.1 + 71240 0.67 0.742616
Target:  5'- gCCGCCCuccgcCGGGGCCCaGCaacggcuccucgCGcUGcUGCa -3'
miRNA:   3'- -GGUGGGu----GCCCCGGG-CG------------GCaACaACG- -5'
5181 5' -59.9 NC_001798.1 + 5303 0.67 0.742616
Target:  5'- gCCGCCgCGCcccGGCUCGCCGggGUUccGCc -3'
miRNA:   3'- -GGUGG-GUGcc-CCGGGCGGCaaCAA--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.