miRNA display CGI


Results 21 - 40 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 5' -59.9 NC_001798.1 + 9508 0.68 0.665696
Target:  5'- uCCGCCaCGCgaauguaaguGGGGCCCGUCGccGagGCc -3'
miRNA:   3'- -GGUGG-GUG----------CCCCGGGCGGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 15831 0.66 0.796784
Target:  5'- gCCGCCCgguucGgGGGGCCCGaaCGUcGggGUc -3'
miRNA:   3'- -GGUGGG-----UgCCCCGGGCg-GCAaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 21791 0.69 0.596905
Target:  5'- cCCGCCCcccguCcGGGCCCGCCuc-GggGCg -3'
miRNA:   3'- -GGUGGGu----GcCCCGGGCGGcaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 22101 0.68 0.636219
Target:  5'- gCCGCCCgcggaccaACGGGGCgaccUCGCCGgccccuUUGggGCc -3'
miRNA:   3'- -GGUGGG--------UGCCCCG----GGCGGC------AACaaCG- -5'
5181 5' -59.9 NC_001798.1 + 23563 0.67 0.694946
Target:  5'- -uGCCCGCGaGGGCCC-CgGggGcgGCg -3'
miRNA:   3'- ggUGGGUGC-CCCGGGcGgCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 23650 0.67 0.742616
Target:  5'- gCCGCCUggaGCGccgccGGGCCCGCgCGgcgGUgGCc -3'
miRNA:   3'- -GGUGGG---UGC-----CCCGGGCG-GCaa-CAaCG- -5'
5181 5' -59.9 NC_001798.1 + 23825 0.67 0.694946
Target:  5'- cCCGCCCcCGGGGCgCgUGCUGUacg-GCg -3'
miRNA:   3'- -GGUGGGuGCCCCG-G-GCGGCAacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 24372 0.79 0.181172
Target:  5'- aCGCCCGCGGGaaGCCCGCCGccgccgccgccccGUUGCc -3'
miRNA:   3'- gGUGGGUGCCC--CGGGCGGCaa-----------CAACG- -5'
5181 5' -59.9 NC_001798.1 + 24462 0.68 0.636219
Target:  5'- gCGCCgCGgGGGuGCUCGCCGcccUGggGCg -3'
miRNA:   3'- gGUGG-GUgCCC-CGGGCGGCa--ACaaCG- -5'
5181 5' -59.9 NC_001798.1 + 24709 0.74 0.334495
Target:  5'- cCCGCgCC-CGGGGCCCGCgGgcGcgGCc -3'
miRNA:   3'- -GGUG-GGuGCCCCGGGCGgCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 24817 0.67 0.704609
Target:  5'- gCGCCUgcGCGGGGaCCUGCgCGUggccgGCg -3'
miRNA:   3'- gGUGGG--UGCCCC-GGGCG-GCAacaa-CG- -5'
5181 5' -59.9 NC_001798.1 + 25075 0.68 0.636219
Target:  5'- cCCGCCC-CGgccaGGGCgCCGCCGggcg-GCg -3'
miRNA:   3'- -GGUGGGuGC----CCCG-GGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 25158 0.68 0.672548
Target:  5'- cCCuCCCGCGGGGgccgcgccccccgcCCCGCCGacGccGCc -3'
miRNA:   3'- -GGuGGGUGCCCC--------------GGGCGGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 25209 0.66 0.761116
Target:  5'- gCCGcgcCCCGCGGcgcugacccgccGGCCCGCCGagg--GCc -3'
miRNA:   3'- -GGU---GGGUGCC------------CCGGGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 25274 0.67 0.729449
Target:  5'- gCCAgCCGcCGGGGCCCaGCCacacgccgGCg -3'
miRNA:   3'- -GGUgGGU-GCCCCGGG-CGGcaacaa--CG- -5'
5181 5' -59.9 NC_001798.1 + 25449 0.69 0.606714
Target:  5'- cCCGCCCcccgGCGGcGcGCCCGCCGccuucgGCc -3'
miRNA:   3'- -GGUGGG----UGCC-C-CGGGCGGCaacaa-CG- -5'
5181 5' -59.9 NC_001798.1 + 25869 0.7 0.567647
Target:  5'- gCGCgCCGCGGacuGGCCCGCCGacgg-GCc -3'
miRNA:   3'- gGUG-GGUGCC---CCGGGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 25926 0.67 0.694946
Target:  5'- -gGCCUGCGaGGugcuGCCCGCCGgcagUGCg -3'
miRNA:   3'- ggUGGGUGC-CC----CGGGCGGCaacaACG- -5'
5181 5' -59.9 NC_001798.1 + 26088 0.68 0.675481
Target:  5'- cUCugCCGCGGGGCCaa-CGUgcgGUaccgcgUGCg -3'
miRNA:   3'- -GGugGGUGCCCCGGgcgGCAa--CA------ACG- -5'
5181 5' -59.9 NC_001798.1 + 26344 0.68 0.636219
Target:  5'- aCGCCgugCGCGGcGGCCCGgCGgaGcUGCg -3'
miRNA:   3'- gGUGG---GUGCC-CCGGGCgGCaaCaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.