Results 21 - 40 of 141 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 87537 | 0.66 | 0.796784 |
Target: 5'- gCCGCCCACGuGuGGCagaGCaCGUUugUGCu -3' miRNA: 3'- -GGUGGGUGC-C-CCGgg-CG-GCAAcaACG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 28813 | 0.66 | 0.796784 |
Target: 5'- uCCGCCgC-CGcGGGCCCggGCCGUcgg-GCg -3' miRNA: 3'- -GGUGG-GuGC-CCCGGG--CGGCAacaaCG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 123457 | 0.66 | 0.796784 |
Target: 5'- gCGCCCccgaccCGGGGCCCgaaGCCGaccucGUcGCg -3' miRNA: 3'- gGUGGGu-----GCCCCGGG---CGGCaa---CAaCG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 15831 | 0.66 | 0.796784 |
Target: 5'- gCCGCCCgguucGgGGGGCCCGaaCGUcGggGUc -3' miRNA: 3'- -GGUGGG-----UgCCCCGGGCg-GCAaCaaCG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 135207 | 0.66 | 0.795917 |
Target: 5'- gCCGCCCuCGcGGGCCUcggggagGCCGggc-UGCc -3' miRNA: 3'- -GGUGGGuGC-CCCGGG-------CGGCaacaACG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 132139 | 0.66 | 0.788054 |
Target: 5'- cCUGCgCCGCcgGGGGCCgGCgGgcGggGCg -3' miRNA: 3'- -GGUG-GGUG--CCCCGGgCGgCaaCaaCG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 123896 | 0.66 | 0.788054 |
Target: 5'- gUACCCACGGacacGGCCCccgaauCCGggGcgUGCu -3' miRNA: 3'- gGUGGGUGCC----CCGGGc-----GGCaaCa-ACG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 107635 | 0.66 | 0.788054 |
Target: 5'- gUCGCCCGuCGGGuGUCgagaCGCCc-UGUUGCg -3' miRNA: 3'- -GGUGGGU-GCCC-CGG----GCGGcaACAACG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 71109 | 0.66 | 0.788054 |
Target: 5'- gCGCCCcCGGGGa-CGCUGaUGgcGCg -3' miRNA: 3'- gGUGGGuGCCCCggGCGGCaACaaCG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 54682 | 0.66 | 0.779194 |
Target: 5'- cCCGCUCGCGGcucagcgcgaGG-CCGCCGggGUcuacgacgcggUGCg -3' miRNA: 3'- -GGUGGGUGCC----------CCgGGCGGCaaCA-----------ACG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 31861 | 0.66 | 0.780086 |
Target: 5'- cCCACgCCGCGGagggggcggcGGCCCGCCcccggaagagGCg -3' miRNA: 3'- -GGUG-GGUGCC----------CCGGGCGGcaacaa----CG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 108682 | 0.66 | 0.782753 |
Target: 5'- gCCGCCCcCGGGgccGCCCGCgGggacaccgagGCa -3' miRNA: 3'- -GGUGGGuGCCC---CGGGCGgCaacaa-----CG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 8944 | 0.66 | 0.788054 |
Target: 5'- gCugCgGCGGGGUggCCGCCGgaccuuuaUGCg -3' miRNA: 3'- gGugGgUGCCCCG--GGCGGCaaca----ACG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 2992 | 0.66 | 0.788054 |
Target: 5'- cCgGCCCGCGGGcCCCggGCgCGggGgcGCg -3' miRNA: 3'- -GgUGGGUGCCCcGGG--CG-GCaaCaaCG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 9102 | 0.66 | 0.788054 |
Target: 5'- gCCACgggaaaggCCGCGGGGgagCCGCCGcgaggUGgucUGCg -3' miRNA: 3'- -GGUG--------GGUGCCCCg--GGCGGCa----ACa--ACG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 44975 | 0.66 | 0.788054 |
Target: 5'- uCCGCCCuCGGaGGCggaGCCGcgGcUGCa -3' miRNA: 3'- -GGUGGGuGCC-CCGgg-CGGCaaCaACG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 85033 | 0.67 | 0.742616 |
Target: 5'- uCCGCCC-CGGGggugccgucgaGCgCCGCCGUgc--GCg -3' miRNA: 3'- -GGUGGGuGCCC-----------CG-GGCGGCAacaaCG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 77276 | 0.67 | 0.742616 |
Target: 5'- gCCGCCCGCGacccGGCCuCGCCccUGUccuuccucgcggUGCu -3' miRNA: 3'- -GGUGGGUGCc---CCGG-GCGGcaACA------------ACG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 71240 | 0.67 | 0.742616 |
Target: 5'- gCCGCCCuccgcCGGGGCCCaGCaacggcuccucgCGcUGcUGCa -3' miRNA: 3'- -GGUGGGu----GCCCCGGG-CG------------GCaACaACG- -5' |
|||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 5303 | 0.67 | 0.742616 |
Target: 5'- gCCGCCgCGCcccGGCUCGCCGggGUUccGCc -3' miRNA: 3'- -GGUGG-GUGcc-CCGGGCGGCaaCAA--CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home