Results 21 - 40 of 141 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5181 | 5' | -59.9 | NC_001798.1 | + | 131383 | 0.7 | 0.529246 |
Target: 5'- aUC-CCCugGGGGCCCGgCGUcccaucggggaUGacgagUGCg -3' miRNA: 3'- -GGuGGGugCCCCGGGCgGCA-----------ACa----ACG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 2089 | 0.7 | 0.529246 |
Target: 5'- aCCACUCcggGgGGGGCCCGCCcccGgcGCg -3' miRNA: 3'- -GGUGGG---UgCCCCGGGCGGcaaCaaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 85246 | 0.7 | 0.538765 |
Target: 5'- cCCGCCCccccgcggccgcGCGGGGCCgCGCgcgaggcuuCGggGggGCg -3' miRNA: 3'- -GGUGGG------------UGCCCCGG-GCG---------GCaaCaaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 149241 | 0.7 | 0.548341 |
Target: 5'- -gGCCCGCgGGGGCgUCGCCGgccGgcGCg -3' miRNA: 3'- ggUGGGUG-CCCCG-GGCGGCaa-CaaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 93263 | 0.7 | 0.548341 |
Target: 5'- aCGCCCGCGGcccgcGCCggCGCCGUcGggGCg -3' miRNA: 3'- gGUGGGUGCCc----CGG--GCGGCAaCaaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 113437 | 0.7 | 0.557971 |
Target: 5'- aCAUCaaACGGGaucGCCUGCCGUUGUcGCc -3' miRNA: 3'- gGUGGg-UGCCC---CGGGCGGCAACAaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 2459 | 0.7 | 0.566678 |
Target: 5'- gCCGCCCugcggguCGGGGCCCucggcggGCCGgcggGUcaGCg -3' miRNA: 3'- -GGUGGGu------GCCCCGGG-------CGGCaa--CAa-CG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 134967 | 0.7 | 0.567647 |
Target: 5'- gCCACCCAUgccgcgugccugGGGGCCUGgcCCGcgGUggGCg -3' miRNA: 3'- -GGUGGGUG------------CCCCGGGC--GGCaaCAa-CG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 129340 | 0.7 | 0.567647 |
Target: 5'- aCGgCCGCGGaGcGCCCGCCGggccugGCg -3' miRNA: 3'- gGUgGGUGCC-C-CGGGCGGCaacaa-CG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 25869 | 0.7 | 0.567647 |
Target: 5'- gCGCgCCGCGGacuGGCCCGCCGacgg-GCc -3' miRNA: 3'- gGUG-GGUGCC---CCGGGCGGCaacaaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 58112 | 0.7 | 0.567647 |
Target: 5'- gCCGCCCA--GGGCCCGgCGUcuggguccuUGUgaagGCg -3' miRNA: 3'- -GGUGGGUgcCCCGGGCgGCA---------ACAa---CG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 45160 | 0.69 | 0.576392 |
Target: 5'- aCCACCCGggacuCGaGGGCUCcaccaucgacgggGCCGUUGcgGCg -3' miRNA: 3'- -GGUGGGU-----GC-CCCGGG-------------CGGCAACaaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 144531 | 0.69 | 0.58712 |
Target: 5'- gCCgACCUcgcguCGGGGagaCCCGCCGUgggGggGCg -3' miRNA: 3'- -GG-UGGGu----GCCCC---GGGCGGCAa--CaaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 92916 | 0.69 | 0.596905 |
Target: 5'- cCCGCCUgcuguucgagGCGgucgucGGGCCCGCCGccgUGgcccUGCg -3' miRNA: 3'- -GGUGGG----------UGC------CCCGGGCGGCa--ACa---ACG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 75186 | 0.69 | 0.596905 |
Target: 5'- -gACgCugGGGGCCCGCCGccccccGgaGCc -3' miRNA: 3'- ggUGgGugCCCCGGGCGGCaa----CaaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 21791 | 0.69 | 0.596905 |
Target: 5'- cCCGCCCcccguCcGGGCCCGCCuc-GggGCg -3' miRNA: 3'- -GGUGGGu----GcCCCGGGCGGcaaCaaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 122104 | 0.69 | 0.596905 |
Target: 5'- gCCGCCCgGCGGGgggcgcuuuGCCaGCCGggGggGCc -3' miRNA: 3'- -GGUGGG-UGCCC---------CGGgCGGCaaCaaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 47853 | 0.69 | 0.605732 |
Target: 5'- uCCACCCcccgGGGGCCCcgugggcGCCGgcgGgcGCu -3' miRNA: 3'- -GGUGGGug--CCCCGGG-------CGGCaa-CaaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 1504 | 0.69 | 0.606714 |
Target: 5'- gCGCCCgagGCGGcGGCCCGgCCGUcca-GCg -3' miRNA: 3'- gGUGGG---UGCC-CCGGGC-GGCAacaaCG- -5' |
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5181 | 5' | -59.9 | NC_001798.1 | + | 135023 | 0.69 | 0.606714 |
Target: 5'- gCC-CCCGCGGgcauGGCCgGCCGUg---GCc -3' miRNA: 3'- -GGuGGGUGCC----CCGGgCGGCAacaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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