miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 5' -59.9 NC_001798.1 + 103702 1.13 0.000778
Target:  5'- cCCACCCACGGGGCCCGCCGUUGUUGCg -3'
miRNA:   3'- -GGUGGGUGCCCCGGGCGGCAACAACG- -5'
5181 5' -59.9 NC_001798.1 + 150798 0.82 0.101368
Target:  5'- cCCGCCCgcaACGGGGCgCCGCCGcUGcUGCu -3'
miRNA:   3'- -GGUGGG---UGCCCCG-GGCGGCaACaACG- -5'
5181 5' -59.9 NC_001798.1 + 24372 0.79 0.181172
Target:  5'- aCGCCCGCGGGaaGCCCGCCGccgccgccgccccGUUGCc -3'
miRNA:   3'- gGUGGGUGCCC--CGGGCGGCaa-----------CAACG- -5'
5181 5' -59.9 NC_001798.1 + 6223 0.75 0.286567
Target:  5'- -gACCCGgGGGGCCgGCCGggGggacggGCg -3'
miRNA:   3'- ggUGGGUgCCCCGGgCGGCaaCaa----CG- -5'
5181 5' -59.9 NC_001798.1 + 86281 0.74 0.327303
Target:  5'- gCACCgGCGGGgaauGCCUGCUGUgcaaucUGUUGCu -3'
miRNA:   3'- gGUGGgUGCCC----CGGGCGGCA------ACAACG- -5'
5181 5' -59.9 NC_001798.1 + 24709 0.74 0.334495
Target:  5'- cCCGCgCC-CGGGGCCCGCgGgcGcgGCc -3'
miRNA:   3'- -GGUG-GGuGCCCCGGGCGgCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 105181 0.73 0.364409
Target:  5'- uCCAUCUccgcggcgGCGGGGCCCGCgGUgg--GCg -3'
miRNA:   3'- -GGUGGG--------UGCCCCGGGCGgCAacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 48373 0.73 0.38803
Target:  5'- gCCGcCCCGCGGGGCgugCCGCCGcgaccGCa -3'
miRNA:   3'- -GGU-GGGUGCCCCG---GGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 79243 0.73 0.404326
Target:  5'- aCGCCCugGgGGGCCUGCUGgcGgaGUu -3'
miRNA:   3'- gGUGGGugC-CCCGGGCGGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 91371 0.73 0.407637
Target:  5'- gCCGCCCGCGGcacaaaacaucgccGCCgGUCGUUGUccUGCu -3'
miRNA:   3'- -GGUGGGUGCCc-------------CGGgCGGCAACA--ACG- -5'
5181 5' -59.9 NC_001798.1 + 78820 0.72 0.446894
Target:  5'- gCCGCCCGCGGcgacGGCCCcgGCCccUGgcGCg -3'
miRNA:   3'- -GGUGGGUGCC----CCGGG--CGGcaACaaCG- -5'
5181 5' -59.9 NC_001798.1 + 29391 0.71 0.464607
Target:  5'- aCCACUCA--GGGCCgCGCCGgcGggGCg -3'
miRNA:   3'- -GGUGGGUgcCCCGG-GCGGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 31672 0.71 0.4736
Target:  5'- -gGCCCGCGccGCCCGCCGUgccgGUggacGCg -3'
miRNA:   3'- ggUGGGUGCccCGGGCGGCAa---CAa---CG- -5'
5181 5' -59.9 NC_001798.1 + 2007 0.71 0.4736
Target:  5'- cCCGCCCAgGcggccguggcGGGCCCGCagaGccgGUUGCc -3'
miRNA:   3'- -GGUGGGUgC----------CCCGGGCGg--Caa-CAACG- -5'
5181 5' -59.9 NC_001798.1 + 57384 0.71 0.491841
Target:  5'- gCACCCGCGagccguaccGGGCCagcggGUCGUggcgGUUGCa -3'
miRNA:   3'- gGUGGGUGC---------CCCGGg----CGGCAa---CAACG- -5'
5181 5' -59.9 NC_001798.1 + 27900 0.71 0.498303
Target:  5'- gCCGCCCGCcaugucccgccgccGGGGUccccgCCGCCGggGUcccgGCg -3'
miRNA:   3'- -GGUGGGUG--------------CCCCG-----GGCGGCaaCAa---CG- -5'
5181 5' -59.9 NC_001798.1 + 70569 0.7 0.51979
Target:  5'- gCGCaCCACGGcGGCCCugggGCCGg---UGCg -3'
miRNA:   3'- gGUG-GGUGCC-CCGGG----CGGCaacaACG- -5'
5181 5' -59.9 NC_001798.1 + 131383 0.7 0.529246
Target:  5'- aUC-CCCugGGGGCCCGgCGUcccaucggggaUGacgagUGCg -3'
miRNA:   3'- -GGuGGGugCCCCGGGCgGCA-----------ACa----ACG- -5'
5181 5' -59.9 NC_001798.1 + 51924 0.7 0.529246
Target:  5'- gCgGCCCGUGGGGgCCGCCGccg-UGCc -3'
miRNA:   3'- -GgUGGGUGCCCCgGGCGGCaacaACG- -5'
5181 5' -59.9 NC_001798.1 + 109245 0.7 0.529246
Target:  5'- gCGCCuCGCGGGGCUgcucgccuCGUCGggGuUUGCg -3'
miRNA:   3'- gGUGG-GUGCCCCGG--------GCGGCaaC-AACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.