miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 5' -59.9 NC_001798.1 + 1504 0.69 0.606714
Target:  5'- gCGCCCgagGCGGcGGCCCGgCCGUcca-GCg -3'
miRNA:   3'- gGUGGG---UGCC-CCGGGC-GGCAacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 1811 0.66 0.778301
Target:  5'- gCugCCGCGagaccacGGGCCCGUCGgcgg-GCc -3'
miRNA:   3'- gGugGGUGC-------CCCGGGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 2007 0.71 0.4736
Target:  5'- cCCGCCCAgGcggccguggcGGGCCCGCagaGccgGUUGCc -3'
miRNA:   3'- -GGUGGGUgC----------CCCGGGCGg--Caa-CAACG- -5'
5181 5' -59.9 NC_001798.1 + 2089 0.7 0.529246
Target:  5'- aCCACUCcggGgGGGGCCCGCCcccGgcGCg -3'
miRNA:   3'- -GGUGGG---UgCCCCGGGCGGcaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 2459 0.7 0.566678
Target:  5'- gCCGCCCugcggguCGGGGCCCucggcggGCCGgcggGUcaGCg -3'
miRNA:   3'- -GGUGGGu------GCCCCGGG-------CGGCaa--CAa-CG- -5'
5181 5' -59.9 NC_001798.1 + 2621 0.68 0.665696
Target:  5'- gCCGCCCgGCGGcGCCCugGCCGggGcggggcucUUGCg -3'
miRNA:   3'- -GGUGGG-UGCCcCGGG--CGGCaaC--------AACG- -5'
5181 5' -59.9 NC_001798.1 + 2957 0.68 0.685234
Target:  5'- gCGCagGCGGGGCgCGUCGgcGUgcgGCg -3'
miRNA:   3'- gGUGggUGCCCCGgGCGGCaaCAa--CG- -5'
5181 5' -59.9 NC_001798.1 + 2992 0.66 0.788054
Target:  5'- cCgGCCCGCGGGcCCCggGCgCGggGgcGCg -3'
miRNA:   3'- -GgUGGGUGCCCcGGG--CG-GCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 3339 0.67 0.742616
Target:  5'- gCUuCCCGCGGGcGUcgUCGCCGUcGUgGCg -3'
miRNA:   3'- -GGuGGGUGCCC-CG--GGCGGCAaCAaCG- -5'
5181 5' -59.9 NC_001798.1 + 3827 0.66 0.7602
Target:  5'- uCCGCCU-CGGGcGCCCcccagagGCCGggGcgGCu -3'
miRNA:   3'- -GGUGGGuGCCC-CGGG-------CGGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 4039 0.67 0.694946
Target:  5'- gCCACcgCCGCGcGGGCCCGgCGgcGcuccagGCg -3'
miRNA:   3'- -GGUG--GGUGC-CCCGGGCgGCaaCaa----CG- -5'
5181 5' -59.9 NC_001798.1 + 4138 0.69 0.61654
Target:  5'- gCCGCCCcCGGGGCCCuCgCGg----GCa -3'
miRNA:   3'- -GGUGGGuGCCCCGGGcG-GCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 4194 0.67 0.723758
Target:  5'- cCCGCCCGCGGcguggucugcGGCgCUGgCGggGgcGCg -3'
miRNA:   3'- -GGUGGGUGCC----------CCG-GGCgGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 4359 0.66 0.761116
Target:  5'- gCGCCgGCggGGGGCgCGCCGgcg--GCg -3'
miRNA:   3'- gGUGGgUG--CCCCGgGCGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 5303 0.67 0.742616
Target:  5'- gCCGCCgCGCcccGGCUCGCCGggGUUccGCc -3'
miRNA:   3'- -GGUGG-GUGcc-CCGGGCGGCaaCAA--CG- -5'
5181 5' -59.9 NC_001798.1 + 5734 0.68 0.685234
Target:  5'- cCCugCC-CGGGGCCCG-CGUcaucccGCg -3'
miRNA:   3'- -GGugGGuGCCCCGGGCgGCAacaa--CG- -5'
5181 5' -59.9 NC_001798.1 + 5872 0.68 0.685234
Target:  5'- cCCugCC-CGGGGCCCG-CGUcaucccGCg -3'
miRNA:   3'- -GGugGGuGCCCCGGGCgGCAacaa--CG- -5'
5181 5' -59.9 NC_001798.1 + 6223 0.75 0.286567
Target:  5'- -gACCCGgGGGGCCgGCCGggGggacggGCg -3'
miRNA:   3'- ggUGGGUgCCCCGGgCGGCaaCaa----CG- -5'
5181 5' -59.9 NC_001798.1 + 8944 0.66 0.788054
Target:  5'- gCugCgGCGGGGUggCCGCCGgaccuuuaUGCg -3'
miRNA:   3'- gGugGgUGCCCCG--GGCGGCaaca----ACG- -5'
5181 5' -59.9 NC_001798.1 + 9102 0.66 0.788054
Target:  5'- gCCACgggaaaggCCGCGGGGgagCCGCCGcgaggUGgucUGCg -3'
miRNA:   3'- -GGUG--------GGUGCCCCg--GGCGGCa----ACa--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.