miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5181 5' -59.9 NC_001798.1 + 153866 0.68 0.672548
Target:  5'- cUCGCUCGgGGGGCUguucgcccacucugCGUCGUcGUUGCc -3'
miRNA:   3'- -GGUGGGUgCCCCGG--------------GCGGCAaCAACG- -5'
5181 5' -59.9 NC_001798.1 + 153676 0.68 0.646057
Target:  5'- uCCGCgggcggggaCGCGGGGgCCGCCGccGgcGCa -3'
miRNA:   3'- -GGUGg--------GUGCCCCgGGCGGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 153219 0.68 0.685234
Target:  5'- aCCGCCCgACGgcccGGGCCCGCgGcg---GCg -3'
miRNA:   3'- -GGUGGG-UGC----CCCGGGCGgCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 153170 0.66 0.751915
Target:  5'- -aGCUC-CGGGGCuCCGCCGgccgagGCc -3'
miRNA:   3'- ggUGGGuGCCCCG-GGCGGCaacaa-CG- -5'
5181 5' -59.9 NC_001798.1 + 153033 0.67 0.704609
Target:  5'- -gGCCCgcGCGGcGGCgCGCgGUUGgccgGCg -3'
miRNA:   3'- ggUGGG--UGCC-CCGgGCGgCAACaa--CG- -5'
5181 5' -59.9 NC_001798.1 + 152241 0.69 0.606714
Target:  5'- gCCGCUCGgggcCGGGGUCCGCCcg-GgaGCu -3'
miRNA:   3'- -GGUGGGU----GCCCCGGGCGGcaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 152062 0.67 0.714216
Target:  5'- aCgGCCCACGGGGguccCCCGaCCGcuuaaGCg -3'
miRNA:   3'- -GgUGGGUGCCCC----GGGC-GGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 150798 0.82 0.101368
Target:  5'- cCCGCCCgcaACGGGGCgCCGCCGcUGcUGCu -3'
miRNA:   3'- -GGUGGG---UGCCCCG-GGCGGCaACaACG- -5'
5181 5' -59.9 NC_001798.1 + 150563 0.69 0.626378
Target:  5'- gCGgCC-CGGGGCCCGCgGggcGgcGCg -3'
miRNA:   3'- gGUgGGuGCCCCGGGCGgCaa-CaaCG- -5'
5181 5' -59.9 NC_001798.1 + 149989 0.68 0.672548
Target:  5'- gCGCCCGCGGacgccggggcgagcGGCCCgugGCCGcgGUcGCc -3'
miRNA:   3'- gGUGGGUGCC--------------CCGGG---CGGCaaCAaCG- -5'
5181 5' -59.9 NC_001798.1 + 149241 0.7 0.548341
Target:  5'- -gGCCCGCgGGGGCgUCGCCGgccGgcGCg -3'
miRNA:   3'- ggUGGGUG-CCCCG-GGCGGCaa-CaaCG- -5'
5181 5' -59.9 NC_001798.1 + 147241 0.69 0.606714
Target:  5'- -gGCCC-CGGGGCCCcggGCCGcgccgGCg -3'
miRNA:   3'- ggUGGGuGCCCCGGG---CGGCaacaaCG- -5'
5181 5' -59.9 NC_001798.1 + 147200 0.67 0.714216
Target:  5'- cCCGCCCgGCGGuccGGCCCGggcccCCGgcGgaGCg -3'
miRNA:   3'- -GGUGGG-UGCC---CCGGGC-----GGCaaCaaCG- -5'
5181 5' -59.9 NC_001798.1 + 144531 0.69 0.58712
Target:  5'- gCCgACCUcgcguCGGGGagaCCCGCCGUgggGggGCg -3'
miRNA:   3'- -GG-UGGGu----GCCCC---GGGCGGCAa--CaaCG- -5'
5181 5' -59.9 NC_001798.1 + 139406 0.66 0.796784
Target:  5'- uCCGCCCccacagcagccCGGGGCcagacCCGCCGUgcgGUUc- -3'
miRNA:   3'- -GGUGGGu----------GCCCCG-----GGCGGCAa--CAAcg -5'
5181 5' -59.9 NC_001798.1 + 135765 0.67 0.733227
Target:  5'- uCCuCCgGCGGccggccgccGGCCCGCCGgaGgagGCc -3'
miRNA:   3'- -GGuGGgUGCC---------CCGGGCGGCaaCaa-CG- -5'
5181 5' -59.9 NC_001798.1 + 135529 0.66 0.770212
Target:  5'- aCGCCCGCcGGGCCCucgaGgCGUccgUGCg -3'
miRNA:   3'- gGUGGGUGcCCCGGG----CgGCAacaACG- -5'
5181 5' -59.9 NC_001798.1 + 135374 0.66 0.770212
Target:  5'- gCUGCUCgGCGGGGUcauggCCGCCGUcUGccUGCa -3'
miRNA:   3'- -GGUGGG-UGCCCCG-----GGCGGCA-ACa-ACG- -5'
5181 5' -59.9 NC_001798.1 + 135291 0.67 0.741681
Target:  5'- gCCGCCCccuCGgagcccuGGGCCCggGCCGUgcUGgaGCg -3'
miRNA:   3'- -GGUGGGu--GC-------CCCGGG--CGGCA--ACaaCG- -5'
5181 5' -59.9 NC_001798.1 + 135207 0.66 0.795917
Target:  5'- gCCGCCCuCGcGGGCCUcggggagGCCGggc-UGCc -3'
miRNA:   3'- -GGUGGGuGC-CCCGGG-------CGGCaacaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.