Results 61 - 80 of 328 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5183 | 3' | -64.2 | NC_001798.1 | + | 149249 | 0.73 | 0.198993 |
Target: 5'- gGGGCGUCGCCgGccGGCGC---GGGCg -3' miRNA: 3'- -UCCGCGGCGGgCuaCCGCGuguCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 22321 | 0.73 | 0.198524 |
Target: 5'- cGGGcCGCCGCCacggacgcggacgCGcgGGCGUcgggGCGGGGCc -3' miRNA: 3'- -UCC-GCGGCGG-------------GCuaCCGCG----UGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 80263 | 0.73 | 0.194347 |
Target: 5'- cGGCacgcgGCUGgCCGAcUGGCGC-CGGGGCa -3' miRNA: 3'- uCCG-----CGGCgGGCU-ACCGCGuGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 77409 | 0.73 | 0.194347 |
Target: 5'- cGGcCGCCGaCCUGGUaguccaGGCGCGCcGGGCc -3' miRNA: 3'- uCC-GCGGC-GGGCUA------CCGCGUGuCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 123436 | 0.73 | 0.218553 |
Target: 5'- gGGGCGCCcccCCCGAcGcGCGCGCccccgacccGGGGCc -3' miRNA: 3'- -UCCGCGGc--GGGCUaC-CGCGUG---------UCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 134986 | 0.73 | 0.198993 |
Target: 5'- uGGGgGCCugGCCCGcggugGGCGC-CAGGGUc -3' miRNA: 3'- -UCCgCGG--CGGGCua---CCGCGuGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 3997 | 0.73 | 0.196194 |
Target: 5'- cGGgGCCGCCCGGccgugaagcggcccgUGGCGuCGCGGccGGCc -3' miRNA: 3'- uCCgCGGCGGGCU---------------ACCGC-GUGUC--CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 98568 | 0.73 | 0.223693 |
Target: 5'- gGGGCGCUggugGCCgCGGUGGCGU-CGGcGGCc -3' miRNA: 3'- -UCCGCGG----CGG-GCUACCGCGuGUC-CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 79114 | 0.72 | 0.256721 |
Target: 5'- uGGGCGCCaaggGCgCCGA--GCGCGCGGaGGCc -3' miRNA: 3'- -UCCGCGG----CG-GGCUacCGCGUGUC-CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 2513 | 0.72 | 0.228936 |
Target: 5'- cGGCgGCCGCggCGgcGGCGUcgGCGGGGCg -3' miRNA: 3'- uCCG-CGGCGg-GCuaCCGCG--UGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 97579 | 0.72 | 0.239732 |
Target: 5'- gGGaGCGCgGcCCCGAgccaGGgGCGCAGGGg -3' miRNA: 3'- -UC-CGCGgC-GGGCUa---CCgCGUGUCCCg -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 21816 | 0.72 | 0.233742 |
Target: 5'- gGGGCGgaGCCCGcgGGaugacgcgggcccCGgGCAGGGCg -3' miRNA: 3'- -UCCGCggCGGGCuaCC-------------GCgUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 13035 | 0.72 | 0.239732 |
Target: 5'- gAGGCacGCUGCCgGggGGaUGCGCAGGGg -3' miRNA: 3'- -UCCG--CGGCGGgCuaCC-GCGUGUCCCg -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 122094 | 0.72 | 0.239183 |
Target: 5'- cGGGCcuggaGCCGCCCGGcggGGgGCGCuuugccagccgggGGGGCc -3' miRNA: 3'- -UCCG-----CGGCGGGCUa--CCgCGUG-------------UCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 36114 | 0.72 | 0.233204 |
Target: 5'- gGGGCccggcugcgucucGCCGCgaucccgCCGGUGGgGCGCGGcGGCg -3' miRNA: 3'- -UCCG-------------CGGCG-------GGCUACCgCGUGUC-CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 25220 | 0.72 | 0.247541 |
Target: 5'- cGGCGCUGaCCCGccGGCccGCcgagggccccgacccGCAGGGCg -3' miRNA: 3'- uCCGCGGC-GGGCuaCCG--CG---------------UGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 134917 | 0.72 | 0.228936 |
Target: 5'- cGGcCGCCGCcgccgCCGAgucGGCGCgugaccugguGCGGGGCg -3' miRNA: 3'- uCC-GCGGCG-----GGCUa--CCGCG----------UGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 102804 | 0.72 | 0.234282 |
Target: 5'- gGGGCGCCGguuuuauaCCCGcgcuccGGCGCA-GGGGCa -3' miRNA: 3'- -UCCGCGGC--------GGGCua----CCGCGUgUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 102362 | 0.72 | 0.239732 |
Target: 5'- cGGCgGCCGCCgGAagcccacccgccUGGCGguCGGcGGCg -3' miRNA: 3'- uCCG-CGGCGGgCU------------ACCGCguGUC-CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 105408 | 0.72 | 0.239732 |
Target: 5'- cAGG-GCCGCCgCGGccgcGGUGCGCuGGGCc -3' miRNA: 3'- -UCCgCGGCGG-GCUa---CCGCGUGuCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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