Results 61 - 80 of 328 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5183 | 3' | -64.2 | NC_001798.1 | + | 22878 | 0.69 | 0.364088 |
Target: 5'- -cGCGCgGCCCGGguucgGGUGgCACGguGGGCc -3' miRNA: 3'- ucCGCGgCGGGCUa----CCGC-GUGU--CCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 23580 | 0.67 | 0.461979 |
Target: 5'- gGGGCGgCGCCCc--GGCcgagcccGCcCAGGGCc -3' miRNA: 3'- -UCCGCgGCGGGcuaCCG-------CGuGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 23656 | 0.67 | 0.454089 |
Target: 5'- uGGaGCGCCGCCgGGcccGCGCGgCGGuGGCc -3' miRNA: 3'- -UC-CGCGGCGGgCUac-CGCGU-GUC-CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 23880 | 0.68 | 0.444545 |
Target: 5'- uGGGgGgCGCCCGA-GGCggaggagGCGC-GGGCc -3' miRNA: 3'- -UCCgCgGCGGGCUaCCG-------CGUGuCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 23926 | 0.77 | 0.116715 |
Target: 5'- cGGGCGCCccggcGCCCGugugGGCGCcgaGCuGGGCg -3' miRNA: 3'- -UCCGCGG-----CGGGCua--CCGCG---UGuCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 24171 | 0.69 | 0.379511 |
Target: 5'- cGGCggGCCGCuUCGGcuggggccUGGCGCACGuGGCg -3' miRNA: 3'- uCCG--CGGCG-GGCU--------ACCGCGUGUcCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 24223 | 0.67 | 0.489692 |
Target: 5'- gAGcCGCCGCUaCGAccGCGCGCAgaaGGGCu -3' miRNA: 3'- -UCcGCGGCGG-GCUacCGCGUGU---CCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 24309 | 0.68 | 0.411644 |
Target: 5'- cGGCGCUGaCCGG-GGCGCgaacccccgacgACGGcGGCg -3' miRNA: 3'- uCCGCGGCgGGCUaCCGCG------------UGUC-CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 24420 | 0.68 | 0.411644 |
Target: 5'- cGGCGUCGCcggCCGAcGaGCGCGCGGuGCc -3' miRNA: 3'- uCCGCGGCG---GGCUaC-CGCGUGUCcCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 24487 | 0.68 | 0.445408 |
Target: 5'- gGGGCGCCugagcgccgcGCCCGccuccGCGCcggcCGGGGCc -3' miRNA: 3'- -UCCGCGG----------CGGGCuac--CGCGu---GUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 24550 | 0.71 | 0.287207 |
Target: 5'- cGGCGCCGgCggUGGUggcggcggccGGCGCGCGGaGGCg -3' miRNA: 3'- uCCGCGGCgG--GCUA----------CCGCGUGUC-CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 24703 | 0.67 | 0.471721 |
Target: 5'- -cGCGCCcccgcGCCCGG-GGCcCGCGGGcGCg -3' miRNA: 3'- ucCGCGG-----CGGGCUaCCGcGUGUCC-CG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 25087 | 0.7 | 0.327462 |
Target: 5'- aGGGCGCCGCCgGgcGGCGCcCcGcGCc -3' miRNA: 3'- -UCCGCGGCGGgCuaCCGCGuGuCcCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 25220 | 0.72 | 0.247541 |
Target: 5'- cGGCGCUGaCCCGccGGCccGCcgagggccccgacccGCAGGGCg -3' miRNA: 3'- uCCGCGGC-GGGCuaCCG--CG---------------UGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 25267 | 0.67 | 0.454089 |
Target: 5'- uGGCGCCGCCa---GcCGC-CGGGGCc -3' miRNA: 3'- uCCGCGGCGGgcuaCcGCGuGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 25310 | 0.66 | 0.554851 |
Target: 5'- cGGcCGCCGCCCuGGaGGCcuacuGCGCcccgcGGGCc -3' miRNA: 3'- uCC-GCGGCGGG-CUaCCG-----CGUGu----CCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 25489 | 0.66 | 0.535924 |
Target: 5'- -cGCGCCucggGCCCGcUGcGcCGCGCGGcGGCc -3' miRNA: 3'- ucCGCGG----CGGGCuAC-C-GCGUGUC-CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 25583 | 0.68 | 0.428329 |
Target: 5'- cGGGCGaggacCUGgCCGcgGGcCGCGCcgGGGGCg -3' miRNA: 3'- -UCCGC-----GGCgGGCuaCC-GCGUG--UCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 25728 | 0.85 | 0.029072 |
Target: 5'- cGGCGCC-CCCGAcgucucggcgcugGGCGCGCAGGGCg -3' miRNA: 3'- uCCGCGGcGGGCUa------------CCGCGUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 25933 | 0.69 | 0.364088 |
Target: 5'- gAGGUGCUGCCCGccGGCaguGCGCcgugcgcuggccGGcGGCg -3' miRNA: 3'- -UCCGCGGCGGGCuaCCG---CGUG------------UC-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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