miRNA display CGI


Results 61 - 80 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 22878 0.69 0.364088
Target:  5'- -cGCGCgGCCCGGguucgGGUGgCACGguGGGCc -3'
miRNA:   3'- ucCGCGgCGGGCUa----CCGC-GUGU--CCCG- -5'
5183 3' -64.2 NC_001798.1 + 23580 0.67 0.461979
Target:  5'- gGGGCGgCGCCCc--GGCcgagcccGCcCAGGGCc -3'
miRNA:   3'- -UCCGCgGCGGGcuaCCG-------CGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 23656 0.67 0.454089
Target:  5'- uGGaGCGCCGCCgGGcccGCGCGgCGGuGGCc -3'
miRNA:   3'- -UC-CGCGGCGGgCUac-CGCGU-GUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 23880 0.68 0.444545
Target:  5'- uGGGgGgCGCCCGA-GGCggaggagGCGC-GGGCc -3'
miRNA:   3'- -UCCgCgGCGGGCUaCCG-------CGUGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 23926 0.77 0.116715
Target:  5'- cGGGCGCCccggcGCCCGugugGGCGCcgaGCuGGGCg -3'
miRNA:   3'- -UCCGCGG-----CGGGCua--CCGCG---UGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 24171 0.69 0.379511
Target:  5'- cGGCggGCCGCuUCGGcuggggccUGGCGCACGuGGCg -3'
miRNA:   3'- uCCG--CGGCG-GGCU--------ACCGCGUGUcCCG- -5'
5183 3' -64.2 NC_001798.1 + 24223 0.67 0.489692
Target:  5'- gAGcCGCCGCUaCGAccGCGCGCAgaaGGGCu -3'
miRNA:   3'- -UCcGCGGCGG-GCUacCGCGUGU---CCCG- -5'
5183 3' -64.2 NC_001798.1 + 24309 0.68 0.411644
Target:  5'- cGGCGCUGaCCGG-GGCGCgaacccccgacgACGGcGGCg -3'
miRNA:   3'- uCCGCGGCgGGCUaCCGCG------------UGUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 24420 0.68 0.411644
Target:  5'- cGGCGUCGCcggCCGAcGaGCGCGCGGuGCc -3'
miRNA:   3'- uCCGCGGCG---GGCUaC-CGCGUGUCcCG- -5'
5183 3' -64.2 NC_001798.1 + 24487 0.68 0.445408
Target:  5'- gGGGCGCCugagcgccgcGCCCGccuccGCGCcggcCGGGGCc -3'
miRNA:   3'- -UCCGCGG----------CGGGCuac--CGCGu---GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 24550 0.71 0.287207
Target:  5'- cGGCGCCGgCggUGGUggcggcggccGGCGCGCGGaGGCg -3'
miRNA:   3'- uCCGCGGCgG--GCUA----------CCGCGUGUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 24703 0.67 0.471721
Target:  5'- -cGCGCCcccgcGCCCGG-GGCcCGCGGGcGCg -3'
miRNA:   3'- ucCGCGG-----CGGGCUaCCGcGUGUCC-CG- -5'
5183 3' -64.2 NC_001798.1 + 25087 0.7 0.327462
Target:  5'- aGGGCGCCGCCgGgcGGCGCcCcGcGCc -3'
miRNA:   3'- -UCCGCGGCGGgCuaCCGCGuGuCcCG- -5'
5183 3' -64.2 NC_001798.1 + 25220 0.72 0.247541
Target:  5'- cGGCGCUGaCCCGccGGCccGCcgagggccccgacccGCAGGGCg -3'
miRNA:   3'- uCCGCGGC-GGGCuaCCG--CG---------------UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 25267 0.67 0.454089
Target:  5'- uGGCGCCGCCa---GcCGC-CGGGGCc -3'
miRNA:   3'- uCCGCGGCGGgcuaCcGCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 25310 0.66 0.554851
Target:  5'- cGGcCGCCGCCCuGGaGGCcuacuGCGCcccgcGGGCc -3'
miRNA:   3'- uCC-GCGGCGGG-CUaCCG-----CGUGu----CCCG- -5'
5183 3' -64.2 NC_001798.1 + 25489 0.66 0.535924
Target:  5'- -cGCGCCucggGCCCGcUGcGcCGCGCGGcGGCc -3'
miRNA:   3'- ucCGCGG----CGGGCuAC-C-GCGUGUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 25583 0.68 0.428329
Target:  5'- cGGGCGaggacCUGgCCGcgGGcCGCGCcgGGGGCg -3'
miRNA:   3'- -UCCGC-----GGCgGGCuaCC-GCGUG--UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 25728 0.85 0.029072
Target:  5'- cGGCGCC-CCCGAcgucucggcgcugGGCGCGCAGGGCg -3'
miRNA:   3'- uCCGCGGcGGGCUa------------CCGCGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 25933 0.69 0.364088
Target:  5'- gAGGUGCUGCCCGccGGCaguGCGCcgugcgcuggccGGcGGCg -3'
miRNA:   3'- -UCCGCGGCGGGCuaCCG---CGUG------------UC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.