miRNA display CGI


Results 41 - 60 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 12682 0.66 0.507977
Target:  5'- cAGcGCGCCgaugaucagGCCCGG-GuuGCugGGGGCg -3'
miRNA:   3'- -UC-CGCGG---------CGGGCUaCcgCGugUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 13035 0.72 0.239732
Target:  5'- gAGGCacGCUGCCgGggGGaUGCGCAGGGg -3'
miRNA:   3'- -UCCG--CGGCGGgCuaCC-GCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 13409 0.7 0.327462
Target:  5'- gGGGgGCC-UCCGAUGGgGCAUguAGGaGCa -3'
miRNA:   3'- -UCCgCGGcGGGCUACCgCGUG--UCC-CG- -5'
5183 3' -64.2 NC_001798.1 + 15049 0.75 0.145644
Target:  5'- gGGGCGgauggGCCCGG-GGCGCGCGGGGg -3'
miRNA:   3'- -UCCGCgg---CGGGCUaCCGCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 15104 0.67 0.48788
Target:  5'- aAGGCGa-GgCCGGUGGCGCugucgucguccuCGGGGg -3'
miRNA:   3'- -UCCGCggCgGGCUACCGCGu-----------GUCCCg -5'
5183 3' -64.2 NC_001798.1 + 15530 0.67 0.486072
Target:  5'- gAGGCGCUgcugguguucguguGCCCGGccccgGGCGUugccgccgccgcgGCGGGGa -3'
miRNA:   3'- -UCCGCGG--------------CGGGCUa----CCGCG-------------UGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 15735 0.66 0.554851
Target:  5'- aGGGUGCCauggCGGUGGcCGaCACAGGGa -3'
miRNA:   3'- -UCCGCGGcgg-GCUACC-GC-GUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 15826 0.78 0.10305
Target:  5'- gAGGCGCCGCCCGGUucggGGgGCccgaacguCGGGGUc -3'
miRNA:   3'- -UCCGCGGCGGGCUA----CCgCGu-------GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 16219 0.74 0.180976
Target:  5'- -cGCGCCGCCugugggggggCGGUGGgGC-CGGGGCc -3'
miRNA:   3'- ucCGCGGCGG----------GCUACCgCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 17216 0.69 0.379511
Target:  5'- uGGUugucgcacgGCCGCCUuucggGGuCGCGCGGGGCc -3'
miRNA:   3'- uCCG---------CGGCGGGcua--CC-GCGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 17991 0.66 0.535924
Target:  5'- -uGCGCgGCCCGGaacaggaggaUGGcCGCugGcuccGGGCa -3'
miRNA:   3'- ucCGCGgCGGGCU----------ACC-GCGugU----CCCG- -5'
5183 3' -64.2 NC_001798.1 + 20142 0.67 0.454089
Target:  5'- cGGgGCCGUaaCGccUGGCGUucagACAGGGCa -3'
miRNA:   3'- uCCgCGGCGg-GCu-ACCGCG----UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 20355 0.71 0.287207
Target:  5'- uGGCGCUGCCgGgcGG-GUuCGGGGCg -3'
miRNA:   3'- uCCGCGGCGGgCuaCCgCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 21035 0.68 0.41082
Target:  5'- aAGGCGgCGCCCGGccUGcgagaaaGCGCGgauguugggauCGGGGCc -3'
miRNA:   3'- -UCCGCgGCGGGCU--AC-------CGCGU-----------GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 21816 0.72 0.233742
Target:  5'- gGGGCGgaGCCCGcgGGaugacgcgggcccCGgGCAGGGCg -3'
miRNA:   3'- -UCCGCggCGGGCuaCC-------------GCgUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 22093 0.69 0.349103
Target:  5'- gGGGCggaGCCGCCCGcgGaccaACGGGGCg -3'
miRNA:   3'- -UCCG---CGGCGGGCuaCcgcgUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 22140 0.66 0.554851
Target:  5'- uGGgGCCGgCgGG-GGCcaacgggaGCGCGGGGCc -3'
miRNA:   3'- uCCgCGGCgGgCUaCCG--------CGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 22246 0.7 0.341778
Target:  5'- cGGGCggaagcggaaGCCGCCCGcgccgGGCGCuaaugagaugccGCGcGGGCg -3'
miRNA:   3'- -UCCG----------CGGCGGGCua---CCGCG------------UGU-CCCG- -5'
5183 3' -64.2 NC_001798.1 + 22321 0.73 0.198524
Target:  5'- cGGGcCGCCGCCacggacgcggacgCGcgGGCGUcgggGCGGGGCc -3'
miRNA:   3'- -UCC-GCGGCGG-------------GCuaCCGCG----UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 22534 0.68 0.411644
Target:  5'- cGGcCGCCaggaucuaCCCGAUcGGCGCGgAGaGGCg -3'
miRNA:   3'- uCC-GCGGc-------GGGCUA-CCGCGUgUC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.