Results 21 - 40 of 328 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5183 | 3' | -64.2 | NC_001798.1 | + | 3997 | 0.73 | 0.196194 |
Target: 5'- cGGgGCCGCCCGGccgugaagcggcccgUGGCGuCGCGGccGGCc -3' miRNA: 3'- uCCgCGGCGGGCU---------------ACCGC-GUGUC--CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 4060 | 0.66 | 0.52561 |
Target: 5'- cGGCGCUccaggcgGCCCGcgGuCGCcGCGGGGg -3' miRNA: 3'- uCCGCGG-------CGGGCuaCcGCG-UGUCCCg -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 4133 | 0.74 | 0.176703 |
Target: 5'- gGGGCGCCGCCCccggGGCccuCGC-GGGCa -3' miRNA: 3'- -UCCGCGGCGGGcua-CCGc--GUGuCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 4189 | 0.68 | 0.419936 |
Target: 5'- aGGGUcCCGCCCGcggcGUGGUcugcgGCGCuggcgGGGGCg -3' miRNA: 3'- -UCCGcGGCGGGC----UACCG-----CGUG-----UCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 4356 | 0.7 | 0.327462 |
Target: 5'- cGaGCGCCGgCgGggGGCGCGcCGGcGGCg -3' miRNA: 3'- uC-CGCGGCgGgCuaCCGCGU-GUC-CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 4823 | 0.67 | 0.498797 |
Target: 5'- -cGUGCCaCCCGAacccgGGcCGCgcgGCGGGGCg -3' miRNA: 3'- ucCGCGGcGGGCUa----CC-GCG---UGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 5225 | 0.7 | 0.332421 |
Target: 5'- --cCGUCGCCUGGcUgauauaguccucggGGCGCGCGGGGCg -3' miRNA: 3'- uccGCGGCGGGCU-A--------------CCGCGUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 5617 | 0.71 | 0.293636 |
Target: 5'- cGGGCGgcuCCGCCCcaaaGggGGCGgggcCGCAGGGUa -3' miRNA: 3'- -UCCGC---GGCGGG----CuaCCGC----GUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 5729 | 0.68 | 0.419936 |
Target: 5'- uGGCGCCcuGCCCGG-GGCccgcgucaucccGCGCuccgccccaaagGGGGCg -3' miRNA: 3'- uCCGCGG--CGGGCUaCCG------------CGUG------------UCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 5898 | 0.7 | 0.313594 |
Target: 5'- cGGGCuCCGcCCCGA-GGCGgGCccggacggGGGGCg -3' miRNA: 3'- -UCCGcGGC-GGGCUaCCGCgUG--------UCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 6228 | 0.7 | 0.334564 |
Target: 5'- gGGGgGCCGgCCGGggGGaCGgGCGGGGg -3' miRNA: 3'- -UCCgCGGCgGGCUa-CC-GCgUGUCCCg -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 6678 | 0.66 | 0.545361 |
Target: 5'- cGGGCGCCGCCUucGUGGacgGgACAccaugucuuGGGCc -3' miRNA: 3'- -UCCGCGGCGGGc-UACCg--CgUGU---------CCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 9120 | 0.71 | 0.293636 |
Target: 5'- gGGGaGCCGCCgCGAggUGGUcugcgGCACGcGGGCg -3' miRNA: 3'- -UCCgCGGCGG-GCU--ACCG-----CGUGU-CCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 9157 | 0.8 | 0.067063 |
Target: 5'- cGGCGCCGCCCGcgccGGgGgGCAGGGUc -3' miRNA: 3'- uCCGCGGCGGGCua--CCgCgUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 9651 | 0.67 | 0.480665 |
Target: 5'- gAGGCGCagcgGgCCGc--GCGCGgAGGGCg -3' miRNA: 3'- -UCCGCGg---CgGGCuacCGCGUgUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 9702 | 0.66 | 0.517227 |
Target: 5'- cGGGCGgguggGCUCGAcgggcucgggcUGGCGCugGGGGa -3' miRNA: 3'- -UCCGCgg---CGGGCU-----------ACCGCGugUCCCg -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 9992 | 0.66 | 0.507977 |
Target: 5'- cAGGCGguaCGCCCaGGaacuuacGGCGCACGGcGCg -3' miRNA: 3'- -UCCGCg--GCGGG-CUa------CCGCGUGUCcCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 11616 | 0.71 | 0.262599 |
Target: 5'- gGGGCuaucucGCCGCUCGcgGGCGC---GGGCg -3' miRNA: 3'- -UCCG------CGGCGGGCuaCCGCGuguCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 11733 | 0.7 | 0.306829 |
Target: 5'- gGGGUGUauaCGCUCGAgGGUcccagGCGCGGGGCc -3' miRNA: 3'- -UCCGCG---GCGGGCUaCCG-----CGUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 12258 | 0.67 | 0.480665 |
Target: 5'- uGGgGCCGCggacgaccaggCCGGUGGCGCagacccACAGGc- -3' miRNA: 3'- uCCgCGGCG-----------GGCUACCGCG------UGUCCcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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