miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 3997 0.73 0.196194
Target:  5'- cGGgGCCGCCCGGccgugaagcggcccgUGGCGuCGCGGccGGCc -3'
miRNA:   3'- uCCgCGGCGGGCU---------------ACCGC-GUGUC--CCG- -5'
5183 3' -64.2 NC_001798.1 + 4060 0.66 0.52561
Target:  5'- cGGCGCUccaggcgGCCCGcgGuCGCcGCGGGGg -3'
miRNA:   3'- uCCGCGG-------CGGGCuaCcGCG-UGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 4133 0.74 0.176703
Target:  5'- gGGGCGCCGCCCccggGGCccuCGC-GGGCa -3'
miRNA:   3'- -UCCGCGGCGGGcua-CCGc--GUGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 4189 0.68 0.419936
Target:  5'- aGGGUcCCGCCCGcggcGUGGUcugcgGCGCuggcgGGGGCg -3'
miRNA:   3'- -UCCGcGGCGGGC----UACCG-----CGUG-----UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 4356 0.7 0.327462
Target:  5'- cGaGCGCCGgCgGggGGCGCGcCGGcGGCg -3'
miRNA:   3'- uC-CGCGGCgGgCuaCCGCGU-GUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 4823 0.67 0.498797
Target:  5'- -cGUGCCaCCCGAacccgGGcCGCgcgGCGGGGCg -3'
miRNA:   3'- ucCGCGGcGGGCUa----CC-GCG---UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 5225 0.7 0.332421
Target:  5'- --cCGUCGCCUGGcUgauauaguccucggGGCGCGCGGGGCg -3'
miRNA:   3'- uccGCGGCGGGCU-A--------------CCGCGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 5617 0.71 0.293636
Target:  5'- cGGGCGgcuCCGCCCcaaaGggGGCGgggcCGCAGGGUa -3'
miRNA:   3'- -UCCGC---GGCGGG----CuaCCGC----GUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 5729 0.68 0.419936
Target:  5'- uGGCGCCcuGCCCGG-GGCccgcgucaucccGCGCuccgccccaaagGGGGCg -3'
miRNA:   3'- uCCGCGG--CGGGCUaCCG------------CGUG------------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 5898 0.7 0.313594
Target:  5'- cGGGCuCCGcCCCGA-GGCGgGCccggacggGGGGCg -3'
miRNA:   3'- -UCCGcGGC-GGGCUaCCGCgUG--------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 6228 0.7 0.334564
Target:  5'- gGGGgGCCGgCCGGggGGaCGgGCGGGGg -3'
miRNA:   3'- -UCCgCGGCgGGCUa-CC-GCgUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 6678 0.66 0.545361
Target:  5'- cGGGCGCCGCCUucGUGGacgGgACAccaugucuuGGGCc -3'
miRNA:   3'- -UCCGCGGCGGGc-UACCg--CgUGU---------CCCG- -5'
5183 3' -64.2 NC_001798.1 + 9120 0.71 0.293636
Target:  5'- gGGGaGCCGCCgCGAggUGGUcugcgGCACGcGGGCg -3'
miRNA:   3'- -UCCgCGGCGG-GCU--ACCG-----CGUGU-CCCG- -5'
5183 3' -64.2 NC_001798.1 + 9157 0.8 0.067063
Target:  5'- cGGCGCCGCCCGcgccGGgGgGCAGGGUc -3'
miRNA:   3'- uCCGCGGCGGGCua--CCgCgUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 9651 0.67 0.480665
Target:  5'- gAGGCGCagcgGgCCGc--GCGCGgAGGGCg -3'
miRNA:   3'- -UCCGCGg---CgGGCuacCGCGUgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 9702 0.66 0.517227
Target:  5'- cGGGCGgguggGCUCGAcgggcucgggcUGGCGCugGGGGa -3'
miRNA:   3'- -UCCGCgg---CGGGCU-----------ACCGCGugUCCCg -5'
5183 3' -64.2 NC_001798.1 + 9992 0.66 0.507977
Target:  5'- cAGGCGguaCGCCCaGGaacuuacGGCGCACGGcGCg -3'
miRNA:   3'- -UCCGCg--GCGGG-CUa------CCGCGUGUCcCG- -5'
5183 3' -64.2 NC_001798.1 + 11616 0.71 0.262599
Target:  5'- gGGGCuaucucGCCGCUCGcgGGCGC---GGGCg -3'
miRNA:   3'- -UCCG------CGGCGGGCuaCCGCGuguCCCG- -5'
5183 3' -64.2 NC_001798.1 + 11733 0.7 0.306829
Target:  5'- gGGGUGUauaCGCUCGAgGGUcccagGCGCGGGGCc -3'
miRNA:   3'- -UCCGCG---GCGGGCUaCCG-----CGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 12258 0.67 0.480665
Target:  5'- uGGgGCCGCggacgaccaggCCGGUGGCGCagacccACAGGc- -3'
miRNA:   3'- uCCgCGGCG-----------GGCUACCGCG------UGUCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.