miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 71 0.7 0.341778
Target:  5'- cGGGCGgCGgCgGcgGGCGggcgGCAGGGCa -3'
miRNA:   3'- -UCCGCgGCgGgCuaCCGCg---UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 153 0.77 0.105657
Target:  5'- cGGGCGCCGCCCcuccccccGcGCGcCGCGGGGCu -3'
miRNA:   3'- -UCCGCGGCGGGcua-----C-CGC-GUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 1413 0.68 0.411644
Target:  5'- cGGcGCGCCcagGCCCcagcGCGCGCAGGcGCg -3'
miRNA:   3'- -UC-CGCGG---CGGGcuacCGCGUGUCC-CG- -5'
5183 3' -64.2 NC_001798.1 + 1484 0.67 0.496058
Target:  5'- cGGGCGCCauggcgucgcccgcGCCCGA-GGCG-GCGGcccGGCc -3'
miRNA:   3'- -UCCGCGG--------------CGGGCUaCCGCgUGUC---CCG- -5'
5183 3' -64.2 NC_001798.1 + 1635 0.66 0.545361
Target:  5'- gAGGCGCag--CGgcGGCGCGuCGGGGUa -3'
miRNA:   3'- -UCCGCGgcggGCuaCCGCGU-GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 1747 0.69 0.387386
Target:  5'- -cGCGCCGCCgGccagcgcacGGCGCACugcacggcGGGCa -3'
miRNA:   3'- ucCGCGGCGGgCua-------CCGCGUGu-------CCCG- -5'
5183 3' -64.2 NC_001798.1 + 1835 0.68 0.445408
Target:  5'- cGGCggGCCaGUCCGc-GGCGCGCAcGGCg -3'
miRNA:   3'- uCCG--CGG-CGGGCuaCCGCGUGUcCCG- -5'
5183 3' -64.2 NC_001798.1 + 2214 0.8 0.072388
Target:  5'- cGGCGCagcggGCCCGA-GGCGCGCAgcGGGCc -3'
miRNA:   3'- uCCGCGg----CGGGCUaCCGCGUGU--CCCG- -5'
5183 3' -64.2 NC_001798.1 + 2255 0.71 0.268586
Target:  5'- gGGcGCGCCGCCgGGgggcggGGCGgCGCAGcGCg -3'
miRNA:   3'- -UC-CGCGGCGGgCUa-----CCGC-GUGUCcCG- -5'
5183 3' -64.2 NC_001798.1 + 2403 0.71 0.300177
Target:  5'- aGGGCGgCGgCCGAgGGCGCcggcgugugGCuGGGCc -3'
miRNA:   3'- -UCCGCgGCgGGCUaCCGCG---------UGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 2513 0.72 0.228936
Target:  5'- cGGCgGCCGCggCGgcGGCGUcgGCGGGGCg -3'
miRNA:   3'- uCCG-CGGCGg-GCuaCCGCG--UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 2545 0.76 0.138697
Target:  5'- gGGGCGCgGCCCccgcggGAggGGCGgcCGCGGGGCg -3'
miRNA:   3'- -UCCGCGgCGGG------CUa-CCGC--GUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 2616 0.91 0.011159
Target:  5'- gGGGCGCCGCCCGgcGGCGCccuggccgggGCGGGGCu -3'
miRNA:   3'- -UCCGCGGCGGGCuaCCGCG----------UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 2664 0.66 0.554851
Target:  5'- -cGCGCCuCCCGc-GGCGCGgAggcGGGCg -3'
miRNA:   3'- ucCGCGGcGGGCuaCCGCGUgU---CCCG- -5'
5183 3' -64.2 NC_001798.1 + 2985 0.76 0.135339
Target:  5'- gGGGCgGCCgGCCCGcgGGCcccggGCGCGGGGg -3'
miRNA:   3'- -UCCG-CGG-CGGGCuaCCG-----CGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 3216 0.71 0.300177
Target:  5'- cGGGCGCgGCgCucaGGCGCccCAGGGCg -3'
miRNA:   3'- -UCCGCGgCGgGcuaCCGCGu-GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 3295 0.67 0.471721
Target:  5'- cGGCgacGCCGCcgCCGAcGGCa-ACGGGGCg -3'
miRNA:   3'- uCCG---CGGCG--GGCUaCCGcgUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 3545 0.71 0.292988
Target:  5'- cGGC-CCGCCgCcAUGGCGUACcccagguGGGGCa -3'
miRNA:   3'- uCCGcGGCGG-GcUACCGCGUG-------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 3757 0.7 0.334564
Target:  5'- -cGCGUCGCCCagcucgGGCGCccACAcGGGCg -3'
miRNA:   3'- ucCGCGGCGGGcua---CCGCG--UGU-CCCG- -5'
5183 3' -64.2 NC_001798.1 + 3834 0.66 0.564389
Target:  5'- cGGGCGCCcCCCaGA-GGC---CGGGGCg -3'
miRNA:   3'- -UCCGCGGcGGG-CUaCCGcguGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.