miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 142127 0.66 0.554851
Target:  5'- gAGcGCGCUGCCgGAcgcggcacaggUGGUGCACguguuugagucAGGGa -3'
miRNA:   3'- -UC-CGCGGCGGgCU-----------ACCGCGUG-----------UCCCg -5'
5183 3' -64.2 NC_001798.1 + 31474 0.66 0.554851
Target:  5'- -cGCGCCGcCCCGcgGGC-C-CcGGGCc -3'
miRNA:   3'- ucCGCGGC-GGGCuaCCGcGuGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 136632 0.66 0.554851
Target:  5'- cAGaGCuCUGCggGGUGGCGCaaaACAGGGCc -3'
miRNA:   3'- -UC-CGcGGCGggCUACCGCG---UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 67556 0.66 0.554851
Target:  5'- uGGuCGCCGCCaGggGGgGCGaccucGGGCu -3'
miRNA:   3'- uCC-GCGGCGGgCuaCCgCGUgu---CCCG- -5'
5183 3' -64.2 NC_001798.1 + 45084 0.66 0.554851
Target:  5'- cGGCGCCuCgUGAaGGCGCGCGcccuGGCc -3'
miRNA:   3'- uCCGCGGcGgGCUaCCGCGUGUc---CCG- -5'
5183 3' -64.2 NC_001798.1 + 25310 0.66 0.554851
Target:  5'- cGGcCGCCGCCCuGGaGGCcuacuGCGCcccgcGGGCc -3'
miRNA:   3'- uCC-GCGGCGGG-CUaCCG-----CGUGu----CCCG- -5'
5183 3' -64.2 NC_001798.1 + 22140 0.66 0.554851
Target:  5'- uGGgGCCGgCgGG-GGCcaacgggaGCGCGGGGCc -3'
miRNA:   3'- uCCgCGGCgGgCUaCCG--------CGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 15735 0.66 0.554851
Target:  5'- aGGGUGCCauggCGGUGGcCGaCACAGGGa -3'
miRNA:   3'- -UCCGCGGcgg-GCUACC-GC-GUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 2664 0.66 0.554851
Target:  5'- -cGCGCCuCCCGc-GGCGCGgAggcGGGCg -3'
miRNA:   3'- ucCGCGGcGGGCuaCCGCGUgU---CCCG- -5'
5183 3' -64.2 NC_001798.1 + 98904 0.66 0.554851
Target:  5'- -cGCGCCgcuGCCCGAc-GCGCccggaGGGGCa -3'
miRNA:   3'- ucCGCGG---CGGGCUacCGCGug---UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 111110 0.66 0.554851
Target:  5'- cAGGCGuuGCgaGuccacaaaGCGCAgCAGGGCg -3'
miRNA:   3'- -UCCGCggCGggCuac-----CGCGU-GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 52059 0.66 0.555803
Target:  5'- gGGGCgcgacugucgcgugGCCGCCCGcuacgcggGGCGCaugacguacaucgccAcCGGGGCu -3'
miRNA:   3'- -UCCG--------------CGGCGGGCua------CCGCG---------------U-GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 139935 0.66 0.564389
Target:  5'- -aGCGg-GCCCuGgcGGCGCACGGGGg -3'
miRNA:   3'- ucCGCggCGGG-CuaCCGCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 117789 0.66 0.564389
Target:  5'- uGGGCGUCGCagCGGUucuCGUACGGGGa -3'
miRNA:   3'- -UCCGCGGCGg-GCUAcc-GCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 74340 0.66 0.564389
Target:  5'- --aCGaCCGCCCcaaGGUGCGguGGGCg -3'
miRNA:   3'- uccGC-GGCGGGcuaCCGCGUguCCCG- -5'
5183 3' -64.2 NC_001798.1 + 72597 0.66 0.564389
Target:  5'- cGGgGCUGCgguccgucgucaCCGAgacgacGGCGCACcucGGGGUa -3'
miRNA:   3'- uCCgCGGCG------------GGCUa-----CCGCGUG---UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 45220 0.66 0.564389
Target:  5'- -uGCGCCGCCUGgcGGacaCGUGCAuGGCc -3'
miRNA:   3'- ucCGCGGCGGGCuaCC---GCGUGUcCCG- -5'
5183 3' -64.2 NC_001798.1 + 3834 0.66 0.564389
Target:  5'- cGGGCGCCcCCCaGA-GGC---CGGGGCg -3'
miRNA:   3'- -UCCGCGGcGGG-CUaCCGcguGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 150621 0.66 0.564389
Target:  5'- gGGGgGCU-CCUG--GGcCGCGCGGGGCu -3'
miRNA:   3'- -UCCgCGGcGGGCuaCC-GCGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 124869 0.66 0.557708
Target:  5'- uGGCGCCuggggacuagaaacaCGGUGGCGCGCu-GGCg -3'
miRNA:   3'- uCCGCGGcgg------------GCUACCGCGUGucCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.