miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 103142 1.09 0.000511
Target:  5'- aAGGCGCCGCCCGAUGGCGCACAGGGCc -3'
miRNA:   3'- -UCCGCGGCGGGCUACCGCGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 2616 0.91 0.011159
Target:  5'- gGGGCGCCGCCCGgcGGCGCccuggccgggGCGGGGCu -3'
miRNA:   3'- -UCCGCGGCGGGCuaCCGCG----------UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 25728 0.85 0.029072
Target:  5'- cGGCGCC-CCCGAcgucucggcgcugGGCGCGCAGGGCg -3'
miRNA:   3'- uCCGCGGcGGGCUa------------CCGCGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 47673 0.83 0.041158
Target:  5'- cGGCGCUgGCCCGAUGcGCGCGCgcccgaGGGGCg -3'
miRNA:   3'- uCCGCGG-CGGGCUAC-CGCGUG------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 43011 0.81 0.056068
Target:  5'- cGGCcagGCCGCCCGggGGgaGCGCGGGGCc -3'
miRNA:   3'- uCCG---CGGCGGGCuaCCg-CGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 119373 0.81 0.056068
Target:  5'- gAGGCGCugguCGCCUGGcUGGCGCACGcGGGCc -3'
miRNA:   3'- -UCCGCG----GCGGGCU-ACCGCGUGU-CCCG- -5'
5183 3' -64.2 NC_001798.1 + 9157 0.8 0.067063
Target:  5'- cGGCGCCGCCCGcgccGGgGgGCAGGGUc -3'
miRNA:   3'- uCCGCGGCGGGCua--CCgCgUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 2214 0.8 0.072388
Target:  5'- cGGCGCagcggGCCCGA-GGCGCGCAgcGGGCc -3'
miRNA:   3'- uCCGCGg----CGGGCUaCCGCGUGU--CCCG- -5'
5183 3' -64.2 NC_001798.1 + 153059 0.79 0.07616
Target:  5'- cGGCGCCGCCCccUGGgGCgggcggagcgGCGGGGCg -3'
miRNA:   3'- uCCGCGGCGGGcuACCgCG----------UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 26484 0.79 0.080121
Target:  5'- uGGGCGUCGgCCGcgGGcCGCGCGGGGa -3'
miRNA:   3'- -UCCGCGGCgGGCuaCC-GCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 132141 0.79 0.080121
Target:  5'- -uGCGCCGCCgGGggccGGCGgGCGGGGCg -3'
miRNA:   3'- ucCGCGGCGGgCUa---CCGCgUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 95122 0.79 0.084279
Target:  5'- uGGcCGCgCGCCCGAUGGuCGUGCuGGGCc -3'
miRNA:   3'- uCC-GCG-GCGGGCUACC-GCGUGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 85986 0.78 0.093218
Target:  5'- gAGGcCGCCGCCgGGgcgcUGGCGCAgGGGGg -3'
miRNA:   3'- -UCC-GCGGCGGgCU----ACCGCGUgUCCCg -5'
5183 3' -64.2 NC_001798.1 + 42742 0.78 0.097527
Target:  5'- aGGGCccGUCGCCCGcacagacgggcGGCGCGCGGGGCc -3'
miRNA:   3'- -UCCG--CGGCGGGCua---------CCGCGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 15826 0.78 0.10305
Target:  5'- gAGGCGCCGCCCGGUucggGGgGCccgaacguCGGGGUc -3'
miRNA:   3'- -UCCGCGGCGGGCUA----CCgCGu-------GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 153 0.77 0.105657
Target:  5'- cGGGCGCCGCCCcuccccccGcGCGcCGCGGGGCu -3'
miRNA:   3'- -UCCGCGGCGGGcua-----C-CGC-GUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 154491 0.77 0.105657
Target:  5'- cGGGCGCCGCCCcuccccccGcGCGcCGCGGGGCu -3'
miRNA:   3'- -UCCGCGGCGGGcua-----C-CGC-GUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 88014 0.77 0.108056
Target:  5'- cGGCGUCuCCCGggGGCGCuuggccggggaggGCAGGGCc -3'
miRNA:   3'- uCCGCGGcGGGCuaCCGCG-------------UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 27252 0.77 0.108326
Target:  5'- gAGGCgGCCgcgggaccgcaGCCCcGUGGCGCGCGGGGg -3'
miRNA:   3'- -UCCG-CGG-----------CGGGcUACCGCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 23926 0.77 0.116715
Target:  5'- cGGGCGCCccggcGCCCGugugGGCGCcgaGCuGGGCg -3'
miRNA:   3'- -UCCGCGG-----CGGGCua--CCGCG---UGuCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.