Results 1 - 20 of 328 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5183 | 3' | -64.2 | NC_001798.1 | + | 111110 | 0.66 | 0.554851 |
Target: 5'- cAGGCGuuGCgaGuccacaaaGCGCAgCAGGGCg -3' miRNA: 3'- -UCCGCggCGggCuac-----CGCGU-GUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 103142 | 1.09 | 0.000511 |
Target: 5'- aAGGCGCCGCCCGAUGGCGCACAGGGCc -3' miRNA: 3'- -UCCGCGGCGGGCUACCGCGUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 2664 | 0.66 | 0.554851 |
Target: 5'- -cGCGCCuCCCGc-GGCGCGgAggcGGGCg -3' miRNA: 3'- ucCGCGGcGGGCuaCCGCGUgU---CCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 15735 | 0.66 | 0.554851 |
Target: 5'- aGGGUGCCauggCGGUGGcCGaCACAGGGa -3' miRNA: 3'- -UCCGCGGcgg-GCUACC-GC-GUGUCCCg -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 22140 | 0.66 | 0.554851 |
Target: 5'- uGGgGCCGgCgGG-GGCcaacgggaGCGCGGGGCc -3' miRNA: 3'- uCCgCGGCgGgCUaCCG--------CGUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 25310 | 0.66 | 0.554851 |
Target: 5'- cGGcCGCCGCCCuGGaGGCcuacuGCGCcccgcGGGCc -3' miRNA: 3'- uCC-GCGGCGGG-CUaCCG-----CGUGu----CCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 45084 | 0.66 | 0.554851 |
Target: 5'- cGGCGCCuCgUGAaGGCGCGCGcccuGGCc -3' miRNA: 3'- uCCGCGGcGgGCUaCCGCGUGUc---CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 67556 | 0.66 | 0.554851 |
Target: 5'- uGGuCGCCGCCaGggGGgGCGaccucGGGCu -3' miRNA: 3'- uCC-GCGGCGGgCuaCCgCGUgu---CCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 136632 | 0.66 | 0.554851 |
Target: 5'- cAGaGCuCUGCggGGUGGCGCaaaACAGGGCc -3' miRNA: 3'- -UC-CGcGGCGggCUACCGCG---UGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 31474 | 0.66 | 0.554851 |
Target: 5'- -cGCGCCGcCCCGcgGGC-C-CcGGGCc -3' miRNA: 3'- ucCGCGGC-GGGCuaCCGcGuGuCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 98904 | 0.66 | 0.554851 |
Target: 5'- -cGCGCCgcuGCCCGAc-GCGCccggaGGGGCa -3' miRNA: 3'- ucCGCGG---CGGGCUacCGCGug---UCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 129293 | 0.66 | 0.564389 |
Target: 5'- cAGGCaCCGCgCG--GGCGCGgaggAGGGCg -3' miRNA: 3'- -UCCGcGGCGgGCuaCCGCGUg---UCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 52059 | 0.66 | 0.555803 |
Target: 5'- gGGGCgcgacugucgcgugGCCGCCCGcuacgcggGGCGCaugacguacaucgccAcCGGGGCu -3' miRNA: 3'- -UCCG--------------CGGCGGGCua------CCGCG---------------U-GUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 124869 | 0.66 | 0.557708 |
Target: 5'- uGGCGCCuggggacuagaaacaCGGUGGCGCGCu-GGCg -3' miRNA: 3'- uCCGCGGcgg------------GCUACCGCGUGucCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 150621 | 0.66 | 0.564389 |
Target: 5'- gGGGgGCU-CCUG--GGcCGCGCGGGGCu -3' miRNA: 3'- -UCCgCGGcGGGCuaCC-GCGUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 3834 | 0.66 | 0.564389 |
Target: 5'- cGGGCGCCcCCCaGA-GGC---CGGGGCg -3' miRNA: 3'- -UCCGCGGcGGG-CUaCCGcguGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 45220 | 0.66 | 0.564389 |
Target: 5'- -uGCGCCGCCUGgcGGacaCGUGCAuGGCc -3' miRNA: 3'- ucCGCGGCGGGCuaCC---GCGUGUcCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 72597 | 0.66 | 0.564389 |
Target: 5'- cGGgGCUGCgguccgucgucaCCGAgacgacGGCGCACcucGGGGUa -3' miRNA: 3'- uCCgCGGCG------------GGCUa-----CCGCGUG---UCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 74340 | 0.66 | 0.564389 |
Target: 5'- --aCGaCCGCCCcaaGGUGCGguGGGCg -3' miRNA: 3'- uccGC-GGCGGGcuaCCGCGUguCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 117789 | 0.66 | 0.564389 |
Target: 5'- uGGGCGUCGCagCGGUucuCGUACGGGGa -3' miRNA: 3'- -UCCGCGGCGg-GCUAcc-GCGUGUCCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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