miRNA display CGI


Results 21 - 40 of 328 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 77787 0.77 0.119644
Target:  5'- -uGCGCCGCCUGcaGGCGCugGcGGGCa -3'
miRNA:   3'- ucCGCGGCGGGCuaCCGCGugU-CCCG- -5'
5183 3' -64.2 NC_001798.1 + 93280 0.76 0.122338
Target:  5'- cGGCGCCGUCgGGgcguaccUGGCGCGCGccgcGGGCc -3'
miRNA:   3'- uCCGCGGCGGgCU-------ACCGCGUGU----CCCG- -5'
5183 3' -64.2 NC_001798.1 + 150810 0.76 0.126954
Target:  5'- gGGGCGCCGCCgcugcugcugcuccgCGG-GGCGCcAgGGGGCg -3'
miRNA:   3'- -UCCGCGGCGG---------------GCUaCCGCG-UgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 27519 0.76 0.128845
Target:  5'- gGGGCGCCcgcgggaaggcaGCCCcgcGGCGCGCGGGGg -3'
miRNA:   3'- -UCCGCGG------------CGGGcuaCCGCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 69167 0.76 0.128845
Target:  5'- cGGGCGgaGCCCGAUGGCGgGCcagguGGGGg -3'
miRNA:   3'- -UCCGCggCGGGCUACCGCgUG-----UCCCg -5'
5183 3' -64.2 NC_001798.1 + 149981 0.76 0.132055
Target:  5'- gGGGCGCggCGCCCGcgGaCGC-CGGGGCg -3'
miRNA:   3'- -UCCGCG--GCGGGCuaCcGCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 2985 0.76 0.135339
Target:  5'- gGGGCgGCCgGCCCGcgGGCcccggGCGCGGGGg -3'
miRNA:   3'- -UCCG-CGG-CGGGCuaCCG-----CGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 2545 0.76 0.138697
Target:  5'- gGGGCGCgGCCCccgcggGAggGGCGgcCGCGGGGCg -3'
miRNA:   3'- -UCCGCGgCGGG------CUa-CCGC--GUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 39534 0.76 0.142132
Target:  5'- -cGCGCCGCgCCucgccgugGGUGGCGC-CGGGGCc -3'
miRNA:   3'- ucCGCGGCG-GG--------CUACCGCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 15049 0.75 0.145644
Target:  5'- gGGGCGgauggGCCCGG-GGCGCGCGGGGg -3'
miRNA:   3'- -UCCGCgg---CGGGCUaCCGCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 150175 0.75 0.149235
Target:  5'- cGGGcCGCCGCCCccuccgcGGCGUGgGGGGCg -3'
miRNA:   3'- -UCC-GCGGCGGGcua----CCGCGUgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 150457 0.75 0.156661
Target:  5'- gGGGCgacgGCCGCgCGggGGCGCGCGGcGCg -3'
miRNA:   3'- -UCCG----CGGCGgGCuaCCGCGUGUCcCG- -5'
5183 3' -64.2 NC_001798.1 + 150556 0.75 0.160497
Target:  5'- aAGGagaGCgGCCCGG-GGCcCGCGGGGCg -3'
miRNA:   3'- -UCCg--CGgCGGGCUaCCGcGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 147095 0.75 0.164419
Target:  5'- cGGCGCCGCgCGuucgcgaaaGGCGCGaaaGGGGCc -3'
miRNA:   3'- uCCGCGGCGgGCua-------CCGCGUg--UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 97446 0.75 0.164419
Target:  5'- gAGGCGCUGCgCCGcgugcUGGCgcgGCugGGGGCc -3'
miRNA:   3'- -UCCGCGGCG-GGCu----ACCG---CGugUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 91777 0.74 0.168426
Target:  5'- aGGGCGgccaCGCCCccugccGAUGaCGCGCGGGGCg -3'
miRNA:   3'- -UCCGCg---GCGGG------CUACcGCGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 77313 0.74 0.17252
Target:  5'- cGGUGCUGgCCGAUaGCGcCGCGGGGUa -3'
miRNA:   3'- uCCGCGGCgGGCUAcCGC-GUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 34798 0.74 0.17252
Target:  5'- cGGCGCgGCCCGG-GGCcC-CGGGGCc -3'
miRNA:   3'- uCCGCGgCGGGCUaCCGcGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 95705 0.74 0.17252
Target:  5'- cGGCGUCGCCCGAaagcgGGCGUuuCAcGGCg -3'
miRNA:   3'- uCCGCGGCGGGCUa----CCGCGu-GUcCCG- -5'
5183 3' -64.2 NC_001798.1 + 52956 0.74 0.176703
Target:  5'- cGGGCGCacguGUCCGGgaGGCGCGCGaccGGGCu -3'
miRNA:   3'- -UCCGCGg---CGGGCUa-CCGCGUGU---CCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.