miRNA display CGI


Results 41 - 60 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 36562 0.74 0.176703
Target:  5'- gGGGCGCgcggCGgCCGGgcgggGGCGCGCGGcGGCc -3'
miRNA:   3'- -UCCGCG----GCgGGCUa----CCGCGUGUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 36520 0.74 0.176703
Target:  5'- gGGGCGCgcggCGgCCGGgcgggGGCGCGCGGcGGCc -3'
miRNA:   3'- -UCCGCG----GCgGGCUa----CCGCGUGUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 36604 0.74 0.176703
Target:  5'- gGGGCGCgcggCGgCCGGgcgggGGCGCGCGGcGGCc -3'
miRNA:   3'- -UCCGCG----GCgGGCUa----CCGCGUGUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 4133 0.74 0.176703
Target:  5'- gGGGCGCCGCCCccggGGCccuCGC-GGGCa -3'
miRNA:   3'- -UCCGCGGCGGGcua-CCGc--GUGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 52956 0.74 0.176703
Target:  5'- cGGGCGCacguGUCCGGgaGGCGCGCGaccGGGCu -3'
miRNA:   3'- -UCCGCGg---CGGGCUa-CCGCGUGU---CCCG- -5'
5183 3' -64.2 NC_001798.1 + 16219 0.74 0.180976
Target:  5'- -cGCGCCGCCugugggggggCGGUGGgGC-CGGGGCc -3'
miRNA:   3'- ucCGCGGCGG----------GCUACCgCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 122002 0.74 0.18534
Target:  5'- cGGCGUCGCCuCGG-GGCuccGC-CAGGGCg -3'
miRNA:   3'- uCCGCGGCGG-GCUaCCG---CGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 150057 0.74 0.189347
Target:  5'- cGGCGCCGCCCucuUGGCcccCACccccuggGGGGCg -3'
miRNA:   3'- uCCGCGGCGGGcu-ACCGc--GUG-------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 48359 0.74 0.189796
Target:  5'- -cGCgGCCGCCCGG-GGcCGCcccGCGGGGCg -3'
miRNA:   3'- ucCG-CGGCGGGCUaCC-GCG---UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 26303 0.74 0.189796
Target:  5'- gGGcGCGCCgcugcgGCCCGucuacGUGGCGCugGGGcGCg -3'
miRNA:   3'- -UC-CGCGG------CGGGC-----UACCGCGugUCC-CG- -5'
5183 3' -64.2 NC_001798.1 + 67134 0.74 0.189796
Target:  5'- cGGCGCCGCCCc-UGGCaucGCgACGGGcGCa -3'
miRNA:   3'- uCCGCGGCGGGcuACCG---CG-UGUCC-CG- -5'
5183 3' -64.2 NC_001798.1 + 80263 0.73 0.194347
Target:  5'- cGGCacgcgGCUGgCCGAcUGGCGC-CGGGGCa -3'
miRNA:   3'- uCCG-----CGGCgGGCU-ACCGCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 77409 0.73 0.194347
Target:  5'- cGGcCGCCGaCCUGGUaguccaGGCGCGCcGGGCc -3'
miRNA:   3'- uCC-GCGGC-GGGCUA------CCGCGUGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 83354 0.73 0.194347
Target:  5'- cGGCGUCGCCCGcgaacauaGGC-UGCGGGGCg -3'
miRNA:   3'- uCCGCGGCGGGCua------CCGcGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 3997 0.73 0.196194
Target:  5'- cGGgGCCGCCCGGccgugaagcggcccgUGGCGuCGCGGccGGCc -3'
miRNA:   3'- uCCgCGGCGGGCU---------------ACCGC-GUGUC--CCG- -5'
5183 3' -64.2 NC_001798.1 + 22321 0.73 0.198524
Target:  5'- cGGGcCGCCGCCacggacgcggacgCGcgGGCGUcgggGCGGGGCc -3'
miRNA:   3'- -UCC-GCGGCGG-------------GCuaCCGCG----UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 149249 0.73 0.198993
Target:  5'- gGGGCGUCGCCgGccGGCGC---GGGCg -3'
miRNA:   3'- -UCCGCGGCGGgCuaCCGCGuguCCCG- -5'
5183 3' -64.2 NC_001798.1 + 134986 0.73 0.198993
Target:  5'- uGGGgGCCugGCCCGcggugGGCGC-CAGGGUc -3'
miRNA:   3'- -UCCgCGG--CGGGCua---CCGCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 94990 0.73 0.203735
Target:  5'- cGGCgGCCGCCUG--GGCccCGCAGGGCg -3'
miRNA:   3'- uCCG-CGGCGGGCuaCCGc-GUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 75991 0.73 0.208575
Target:  5'- --cCGCCGCCCcg-GGCGCcggcgGCAGGGCc -3'
miRNA:   3'- uccGCGGCGGGcuaCCGCG-----UGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.