miRNA display CGI


Results 41 - 60 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 25489 0.66 0.535924
Target:  5'- -cGCGCCucggGCCCGcUGcGcCGCGCGGcGGCc -3'
miRNA:   3'- ucCGCGG----CGGGCuAC-C-GCGUGUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 43089 0.66 0.529352
Target:  5'- cGGGCGCCGCCgCcgcguccgcgaccacGGUcgcuuccggcgGGCGCGCGucccgcgucacgcGGGCc -3'
miRNA:   3'- -UCCGCGGCGG-G---------------CUA-----------CCGCGUGU-------------CCCG- -5'
5183 3' -64.2 NC_001798.1 + 43709 0.66 0.526545
Target:  5'- -uGCGUgGCCa---GGCGCGgGGGGCu -3'
miRNA:   3'- ucCGCGgCGGgcuaCCGCGUgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 101846 0.66 0.526545
Target:  5'- gAGGCGUgGguCCCGgcGGCGgCGgAGGGg -3'
miRNA:   3'- -UCCGCGgC--GGGCuaCCGC-GUgUCCCg -5'
5183 3' -64.2 NC_001798.1 + 28336 0.66 0.526545
Target:  5'- uGGCG-CGCCUGAgccuGCGC-CGGcGGCg -3'
miRNA:   3'- uCCGCgGCGGGCUac--CGCGuGUC-CCG- -5'
5183 3' -64.2 NC_001798.1 + 30670 0.66 0.526545
Target:  5'- -uGUGCaacacCCCGGUGGCGUACcugauaguGGGCg -3'
miRNA:   3'- ucCGCGgc---GGGCUACCGCGUGu-------CCCG- -5'
5183 3' -64.2 NC_001798.1 + 34590 0.66 0.526545
Target:  5'- cGGCGCgGCgucUCGGUGGgaCGCGggcaaAGGGCg -3'
miRNA:   3'- uCCGCGgCG---GGCUACC--GCGUg----UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 41427 0.66 0.526545
Target:  5'- uGGCGuaGCagaCGcgGGCGUGgGGGGUc -3'
miRNA:   3'- uCCGCggCGg--GCuaCCGCGUgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 86427 0.66 0.526545
Target:  5'- gAGGCGgaC-CCCGA-GGCGCAgccCGGGGa -3'
miRNA:   3'- -UCCGCg-GcGGGCUaCCGCGU---GUCCCg -5'
5183 3' -64.2 NC_001798.1 + 134449 0.66 0.526545
Target:  5'- -cGCGUCG-CCGAgcaccccGGCGCGCGGuuGGCg -3'
miRNA:   3'- ucCGCGGCgGGCUa------CCGCGUGUC--CCG- -5'
5183 3' -64.2 NC_001798.1 + 4060 0.66 0.52561
Target:  5'- cGGCGCUccaggcgGCCCGcgGuCGCcGCGGGGg -3'
miRNA:   3'- uCCGCGG-------CGGGCuaCcGCG-UGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 125454 0.66 0.52561
Target:  5'- uGGaGCGUcccgaCGCCCGGgaccacggucuggUGGCGCuu-GGGCg -3'
miRNA:   3'- -UC-CGCG-----GCGGGCU-------------ACCGCGuguCCCG- -5'
5183 3' -64.2 NC_001798.1 + 147191 0.66 0.524676
Target:  5'- aAGGCGucccCCGCCCGGcgguccggcccgGGCccccggcggaGCGCGGGGg -3'
miRNA:   3'- -UCCGC----GGCGGGCUa-----------CCG----------CGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 102656 0.66 0.517227
Target:  5'- gAGGgGCCggggcGCCCGAUGcCGaaACGGGGUu -3'
miRNA:   3'- -UCCgCGG-----CGGGCUACcGCg-UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 152223 0.66 0.517227
Target:  5'- cGGGgGuCUGCCgCGgcGGcCGCuCGGGGCc -3'
miRNA:   3'- -UCCgC-GGCGG-GCuaCC-GCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 9702 0.66 0.517227
Target:  5'- cGGGCGgguggGCUCGAcgggcucgggcUGGCGCugGGGGa -3'
miRNA:   3'- -UCCGCgg---CGGGCU-----------ACCGCGugUCCCg -5'
5183 3' -64.2 NC_001798.1 + 31998 0.66 0.517227
Target:  5'- cGGCGCCGCgCCGGgccccGGacuCGgACucGGGCg -3'
miRNA:   3'- uCCGCGGCG-GGCUa----CC---GCgUGu-CCCG- -5'
5183 3' -64.2 NC_001798.1 + 38967 0.66 0.517227
Target:  5'- cGGcCGCCGuUCCGAUgauagGGUcCugGGGGCg -3'
miRNA:   3'- uCC-GCGGC-GGGCUA-----CCGcGugUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 77688 0.66 0.517227
Target:  5'- cGGCccaGCgCGCCCGG-GGCagcagcgaGCGCuGGGCc -3'
miRNA:   3'- uCCG---CG-GCGGGCUaCCG--------CGUGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 58775 0.66 0.517227
Target:  5'- aGGGUGCCGaCaaacaGG-GGC-CGCGGGGCg -3'
miRNA:   3'- -UCCGCGGCgGg----CUaCCGcGUGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.