miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 136632 0.66 0.554851
Target:  5'- cAGaGCuCUGCggGGUGGCGCaaaACAGGGCc -3'
miRNA:   3'- -UC-CGcGGCGggCUACCGCG---UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 67556 0.66 0.554851
Target:  5'- uGGuCGCCGCCaGggGGgGCGaccucGGGCu -3'
miRNA:   3'- uCC-GCGGCGGgCuaCCgCGUgu---CCCG- -5'
5183 3' -64.2 NC_001798.1 + 92985 0.66 0.5539
Target:  5'- uGGCccgcgcgGCCGCCCaccUGGCGUucgacgaaaaccACgAGGGCg -3'
miRNA:   3'- uCCG-------CGGCGGGcu-ACCGCG------------UG-UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 31369 0.66 0.545361
Target:  5'- uGGGCGaagaCGCCgCGgcGGCGg--AGGGCa -3'
miRNA:   3'- -UCCGCg---GCGG-GCuaCCGCgugUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 1635 0.66 0.545361
Target:  5'- gAGGCGCag--CGgcGGCGCGuCGGGGUa -3'
miRNA:   3'- -UCCGCGgcggGCuaCCGCGU-GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 6678 0.66 0.545361
Target:  5'- cGGGCGCCGCCUucGUGGacgGgACAccaugucuuGGGCc -3'
miRNA:   3'- -UCCGCGGCGGGc-UACCg--CgUGU---------CCCG- -5'
5183 3' -64.2 NC_001798.1 + 32044 0.66 0.545361
Target:  5'- cGGGcCGCuCGCCCc--GGCGUcCGcGGGCg -3'
miRNA:   3'- -UCC-GCG-GCGGGcuaCCGCGuGU-CCCG- -5'
5183 3' -64.2 NC_001798.1 + 39861 0.66 0.545361
Target:  5'- gAGGCGUCGaggcuUCGggGGUGCcggcguccuCGGGGCg -3'
miRNA:   3'- -UCCGCGGCg----GGCuaCCGCGu--------GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 108873 0.66 0.545361
Target:  5'- cGGGUGCgaCGCCgCGcucGUGcGCGCGCgauacgggaAGGGCu -3'
miRNA:   3'- -UCCGCG--GCGG-GC---UAC-CGCGUG---------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 116774 0.66 0.545361
Target:  5'- cGGCGCUGCugugcuCCGc-GGCGCccgACGcGGGCg -3'
miRNA:   3'- uCCGCGGCG------GGCuaCCGCG---UGU-CCCG- -5'
5183 3' -64.2 NC_001798.1 + 144575 0.66 0.545361
Target:  5'- aGGGCgaggacggGCgGCUgGGUGGCGa--GGGGCu -3'
miRNA:   3'- -UCCG--------CGgCGGgCUACCGCgugUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 43166 0.66 0.545361
Target:  5'- -cGCGCCGCCgCGGcaaacgccUGGCcGguCGGGGa -3'
miRNA:   3'- ucCGCGGCGG-GCU--------ACCG-CguGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 31207 0.66 0.535924
Target:  5'- cGGCGCC-CCC--UGGCGCcccGCGGaGCa -3'
miRNA:   3'- uCCGCGGcGGGcuACCGCG---UGUCcCG- -5'
5183 3' -64.2 NC_001798.1 + 33437 0.66 0.535924
Target:  5'- gGGGUcaGCCGCaCCaccGGCGCGaagccaGGGGCc -3'
miRNA:   3'- -UCCG--CGGCG-GGcuaCCGCGUg-----UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 83979 0.66 0.535924
Target:  5'- aGGGC-CUGCUCGgcGGCGCgacACAGGa- -3'
miRNA:   3'- -UCCGcGGCGGGCuaCCGCG---UGUCCcg -5'
5183 3' -64.2 NC_001798.1 + 87163 0.66 0.535924
Target:  5'- gGGGCuGCUGCCCc---GCGUGCAgcgcGGGCg -3'
miRNA:   3'- -UCCG-CGGCGGGcuacCGCGUGU----CCCG- -5'
5183 3' -64.2 NC_001798.1 + 29305 0.66 0.535924
Target:  5'- -cGCGCCGCCgGGUGG-GU---GGGCu -3'
miRNA:   3'- ucCGCGGCGGgCUACCgCGuguCCCG- -5'
5183 3' -64.2 NC_001798.1 + 32760 0.66 0.535924
Target:  5'- -cGCGCCaCCCG-UGGUcucgggaGCAGGGCg -3'
miRNA:   3'- ucCGCGGcGGGCuACCGcg-----UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 42079 0.66 0.535924
Target:  5'- -cGCGUCGCCCaaa-GUGCucCAGGGCg -3'
miRNA:   3'- ucCGCGGCGGGcuacCGCGu-GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 17991 0.66 0.535924
Target:  5'- -uGCGCgGCCCGGaacaggaggaUGGcCGCugGcuccGGGCa -3'
miRNA:   3'- ucCGCGgCGGGCU----------ACC-GCGugU----CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.