miRNA display CGI


Results 61 - 80 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 122790 0.66 0.517227
Target:  5'- -cGCGUaCGCCCuGGccgugcUGGCGCAucugggcggcCAGGGCg -3'
miRNA:   3'- ucCGCG-GCGGG-CU------ACCGCGU----------GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 133732 0.66 0.516299
Target:  5'- gGGGCGCgCGCUucaaGcUGcGCGCGCccgcgugGGGGCg -3'
miRNA:   3'- -UCCGCG-GCGGg---CuAC-CGCGUG-------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 138191 0.66 0.514445
Target:  5'- cGGUGCCGCCCuugccgaacccaggGAgGGUGUggucgacgGCGGGGg -3'
miRNA:   3'- uCCGCGGCGGG--------------CUaCCGCG--------UGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 12682 0.66 0.507977
Target:  5'- cAGcGCGCCgaugaucagGCCCGG-GuuGCugGGGGCg -3'
miRNA:   3'- -UC-CGCGG---------CGGGCUaCcgCGugUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 9992 0.66 0.507977
Target:  5'- cAGGCGguaCGCCCaGGaacuuacGGCGCACGGcGCg -3'
miRNA:   3'- -UCCGCg--GCGGG-CUa------CCGCGUGUCcCG- -5'
5183 3' -64.2 NC_001798.1 + 90377 0.66 0.507056
Target:  5'- gAGGUuccgaacGCCGUCgGggGGCGCGguuGGGCc -3'
miRNA:   3'- -UCCG-------CGGCGGgCuaCCGCGUgu-CCCG- -5'
5183 3' -64.2 NC_001798.1 + 29998 0.66 0.507056
Target:  5'- cGuGCGCCGCCCcccgacccucuggGggGGCGagggagGCAGGGa -3'
miRNA:   3'- uC-CGCGGCGGG-------------CuaCCGCg-----UGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 56393 0.67 0.498797
Target:  5'- --cUGCCGCUCGGUGGgGUcccgcgGCGGGGg -3'
miRNA:   3'- uccGCGGCGGGCUACCgCG------UGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 71101 0.67 0.498797
Target:  5'- cGGCGUgcgCGCCCccggggacgcuGAUGGCGCGCGuGcGGa -3'
miRNA:   3'- uCCGCG---GCGGG-----------CUACCGCGUGU-C-CCg -5'
5183 3' -64.2 NC_001798.1 + 78817 0.67 0.498797
Target:  5'- -aGCGCCGCCCGc-GGCG-ACGGccccGGCc -3'
miRNA:   3'- ucCGCGGCGGGCuaCCGCgUGUC----CCG- -5'
5183 3' -64.2 NC_001798.1 + 95609 0.67 0.498797
Target:  5'- cGGCGCCGCCgGGgaGGUGUuuaACuuuGGGg -3'
miRNA:   3'- uCCGCGGCGGgCUa-CCGCG---UGu--CCCg -5'
5183 3' -64.2 NC_001798.1 + 4823 0.67 0.498797
Target:  5'- -cGUGCCaCCCGAacccgGGcCGCgcgGCGGGGCg -3'
miRNA:   3'- ucCGCGGcGGGCUa----CC-GCG---UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 43948 0.67 0.498797
Target:  5'- aAGGaCGCgGCaCUGAgGGUGU-CGGGGCg -3'
miRNA:   3'- -UCC-GCGgCG-GGCUaCCGCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 1484 0.67 0.496058
Target:  5'- cGGGCGCCauggcgucgcccgcGCCCGA-GGCG-GCGGcccGGCc -3'
miRNA:   3'- -UCCGCGG--------------CGGGCUaCCGCgUGUC---CCG- -5'
5183 3' -64.2 NC_001798.1 + 26400 0.67 0.489692
Target:  5'- cGGGCGCUGCUCGAgcccgacGGCGaCGCGcccccgcuGGuGCu -3'
miRNA:   3'- -UCCGCGGCGGGCUa------CCGC-GUGU--------CC-CG- -5'
5183 3' -64.2 NC_001798.1 + 28669 0.67 0.489692
Target:  5'- cGGCGCCGCgUGgcGGCgGC-CGaGGCg -3'
miRNA:   3'- uCCGCGGCGgGCuaCCG-CGuGUcCCG- -5'
5183 3' -64.2 NC_001798.1 + 38864 0.67 0.489692
Target:  5'- cAGGCGUCGCCgCGAgcacaGGUcguccagcccGCACAggccucGGGCc -3'
miRNA:   3'- -UCCGCGGCGG-GCUa----CCG----------CGUGU------CCCG- -5'
5183 3' -64.2 NC_001798.1 + 68741 0.67 0.489692
Target:  5'- aAGGCGCagGCCgGgAUGGUaacgGCcgaACGGGGCc -3'
miRNA:   3'- -UCCGCGg-CGGgC-UACCG----CG---UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 78852 0.67 0.489692
Target:  5'- cGGCacgccgGCCGCCUGggGGCGCucuuugauACucGGCg -3'
miRNA:   3'- uCCG------CGGCGGGCuaCCGCG--------UGucCCG- -5'
5183 3' -64.2 NC_001798.1 + 24223 0.67 0.489692
Target:  5'- gAGcCGCCGCUaCGAccGCGCGCAgaaGGGCu -3'
miRNA:   3'- -UCcGCGGCGG-GCUacCGCGUGU---CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.