Results 1 - 20 of 328 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5183 | 3' | -64.2 | NC_001798.1 | + | 103142 | 1.09 | 0.000511 |
Target: 5'- aAGGCGCCGCCCGAUGGCGCACAGGGCc -3' miRNA: 3'- -UCCGCGGCGGGCUACCGCGUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 2616 | 0.91 | 0.011159 |
Target: 5'- gGGGCGCCGCCCGgcGGCGCccuggccgggGCGGGGCu -3' miRNA: 3'- -UCCGCGGCGGGCuaCCGCG----------UGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 25728 | 0.85 | 0.029072 |
Target: 5'- cGGCGCC-CCCGAcgucucggcgcugGGCGCGCAGGGCg -3' miRNA: 3'- uCCGCGGcGGGCUa------------CCGCGUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 47673 | 0.83 | 0.041158 |
Target: 5'- cGGCGCUgGCCCGAUGcGCGCGCgcccgaGGGGCg -3' miRNA: 3'- uCCGCGG-CGGGCUAC-CGCGUG------UCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 119373 | 0.81 | 0.056068 |
Target: 5'- gAGGCGCugguCGCCUGGcUGGCGCACGcGGGCc -3' miRNA: 3'- -UCCGCG----GCGGGCU-ACCGCGUGU-CCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 43011 | 0.81 | 0.056068 |
Target: 5'- cGGCcagGCCGCCCGggGGgaGCGCGGGGCc -3' miRNA: 3'- uCCG---CGGCGGGCuaCCg-CGUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 9157 | 0.8 | 0.067063 |
Target: 5'- cGGCGCCGCCCGcgccGGgGgGCAGGGUc -3' miRNA: 3'- uCCGCGGCGGGCua--CCgCgUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 2214 | 0.8 | 0.072388 |
Target: 5'- cGGCGCagcggGCCCGA-GGCGCGCAgcGGGCc -3' miRNA: 3'- uCCGCGg----CGGGCUaCCGCGUGU--CCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 26484 | 0.79 | 0.080121 |
Target: 5'- uGGGCGUCGgCCGcgGGcCGCGCGGGGa -3' miRNA: 3'- -UCCGCGGCgGGCuaCC-GCGUGUCCCg -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 132141 | 0.79 | 0.080121 |
Target: 5'- -uGCGCCGCCgGGggccGGCGgGCGGGGCg -3' miRNA: 3'- ucCGCGGCGGgCUa---CCGCgUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 95122 | 0.79 | 0.084279 |
Target: 5'- uGGcCGCgCGCCCGAUGGuCGUGCuGGGCc -3' miRNA: 3'- uCC-GCG-GCGGGCUACC-GCGUGuCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 153059 | 0.79 | 0.07616 |
Target: 5'- cGGCGCCGCCCccUGGgGCgggcggagcgGCGGGGCg -3' miRNA: 3'- uCCGCGGCGGGcuACCgCG----------UGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 15826 | 0.78 | 0.10305 |
Target: 5'- gAGGCGCCGCCCGGUucggGGgGCccgaacguCGGGGUc -3' miRNA: 3'- -UCCGCGGCGGGCUA----CCgCGu-------GUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 85986 | 0.78 | 0.093218 |
Target: 5'- gAGGcCGCCGCCgGGgcgcUGGCGCAgGGGGg -3' miRNA: 3'- -UCC-GCGGCGGgCU----ACCGCGUgUCCCg -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 42742 | 0.78 | 0.097527 |
Target: 5'- aGGGCccGUCGCCCGcacagacgggcGGCGCGCGGGGCc -3' miRNA: 3'- -UCCG--CGGCGGGCua---------CCGCGUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 88014 | 0.77 | 0.108056 |
Target: 5'- cGGCGUCuCCCGggGGCGCuuggccggggaggGCAGGGCc -3' miRNA: 3'- uCCGCGGcGGGCuaCCGCG-------------UGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 23926 | 0.77 | 0.116715 |
Target: 5'- cGGGCGCCccggcGCCCGugugGGCGCcgaGCuGGGCg -3' miRNA: 3'- -UCCGCGG-----CGGGCua--CCGCG---UGuCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 154491 | 0.77 | 0.105657 |
Target: 5'- cGGGCGCCGCCCcuccccccGcGCGcCGCGGGGCu -3' miRNA: 3'- -UCCGCGGCGGGcua-----C-CGC-GUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 153 | 0.77 | 0.105657 |
Target: 5'- cGGGCGCCGCCCcuccccccGcGCGcCGCGGGGCu -3' miRNA: 3'- -UCCGCGGCGGGcua-----C-CGC-GUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 77787 | 0.77 | 0.119644 |
Target: 5'- -uGCGCCGCCUGcaGGCGCugGcGGGCa -3' miRNA: 3'- ucCGCGGCGGGCuaCCGCGugU-CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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