miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 88014 0.77 0.108056
Target:  5'- cGGCGUCuCCCGggGGCGCuuggccggggaggGCAGGGCc -3'
miRNA:   3'- uCCGCGGcGGGCuaCCGCG-------------UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 93280 0.76 0.122338
Target:  5'- cGGCGCCGUCgGGgcguaccUGGCGCGCGccgcGGGCc -3'
miRNA:   3'- uCCGCGGCGGgCU-------ACCGCGUGU----CCCG- -5'
5183 3' -64.2 NC_001798.1 + 27519 0.76 0.128845
Target:  5'- gGGGCGCCcgcgggaaggcaGCCCcgcGGCGCGCGGGGg -3'
miRNA:   3'- -UCCGCGG------------CGGGcuaCCGCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 2985 0.76 0.135339
Target:  5'- gGGGCgGCCgGCCCGcgGGCcccggGCGCGGGGg -3'
miRNA:   3'- -UCCG-CGG-CGGGCuaCCG-----CGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 150810 0.76 0.126954
Target:  5'- gGGGCGCCGCCgcugcugcugcuccgCGG-GGCGCcAgGGGGCg -3'
miRNA:   3'- -UCCGCGGCGG---------------GCUaCCGCG-UgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 2545 0.76 0.138697
Target:  5'- gGGGCGCgGCCCccgcggGAggGGCGgcCGCGGGGCg -3'
miRNA:   3'- -UCCGCGgCGGG------CUa-CCGC--GUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 149981 0.76 0.132055
Target:  5'- gGGGCGCggCGCCCGcgGaCGC-CGGGGCg -3'
miRNA:   3'- -UCCGCG--GCGGGCuaCcGCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 69167 0.76 0.128845
Target:  5'- cGGGCGgaGCCCGAUGGCGgGCcagguGGGGg -3'
miRNA:   3'- -UCCGCggCGGGCUACCGCgUG-----UCCCg -5'
5183 3' -64.2 NC_001798.1 + 39534 0.76 0.142132
Target:  5'- -cGCGCCGCgCCucgccgugGGUGGCGC-CGGGGCc -3'
miRNA:   3'- ucCGCGGCG-GG--------CUACCGCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 147095 0.75 0.164419
Target:  5'- cGGCGCCGCgCGuucgcgaaaGGCGCGaaaGGGGCc -3'
miRNA:   3'- uCCGCGGCGgGCua-------CCGCGUg--UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 150457 0.75 0.156661
Target:  5'- gGGGCgacgGCCGCgCGggGGCGCGCGGcGCg -3'
miRNA:   3'- -UCCG----CGGCGgGCuaCCGCGUGUCcCG- -5'
5183 3' -64.2 NC_001798.1 + 150175 0.75 0.149235
Target:  5'- cGGGcCGCCGCCCccuccgcGGCGUGgGGGGCg -3'
miRNA:   3'- -UCC-GCGGCGGGcua----CCGCGUgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 97446 0.75 0.164419
Target:  5'- gAGGCGCUGCgCCGcgugcUGGCgcgGCugGGGGCc -3'
miRNA:   3'- -UCCGCGGCG-GGCu----ACCG---CGugUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 150556 0.75 0.160497
Target:  5'- aAGGagaGCgGCCCGG-GGCcCGCGGGGCg -3'
miRNA:   3'- -UCCg--CGgCGGGCUaCCGcGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 15049 0.75 0.145644
Target:  5'- gGGGCGgauggGCCCGG-GGCGCGCGGGGg -3'
miRNA:   3'- -UCCGCgg---CGGGCUaCCGCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 122002 0.74 0.18534
Target:  5'- cGGCGUCGCCuCGG-GGCuccGC-CAGGGCg -3'
miRNA:   3'- uCCGCGGCGG-GCUaCCG---CGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 48359 0.74 0.189796
Target:  5'- -cGCgGCCGCCCGG-GGcCGCcccGCGGGGCg -3'
miRNA:   3'- ucCG-CGGCGGGCUaCC-GCG---UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 26303 0.74 0.189796
Target:  5'- gGGcGCGCCgcugcgGCCCGucuacGUGGCGCugGGGcGCg -3'
miRNA:   3'- -UC-CGCGG------CGGGC-----UACCGCGugUCC-CG- -5'
5183 3' -64.2 NC_001798.1 + 16219 0.74 0.180976
Target:  5'- -cGCGCCGCCugugggggggCGGUGGgGC-CGGGGCc -3'
miRNA:   3'- ucCGCGGCGG----------GCUACCgCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 150057 0.74 0.189347
Target:  5'- cGGCGCCGCCCucuUGGCcccCACccccuggGGGGCg -3'
miRNA:   3'- uCCGCGGCGGGcu-ACCGc--GUG-------UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.