miRNA display CGI


Results 1 - 20 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 154491 0.77 0.105657
Target:  5'- cGGGCGCCGCCCcuccccccGcGCGcCGCGGGGCu -3'
miRNA:   3'- -UCCGCGGCGGGcua-----C-CGC-GUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 154409 0.7 0.341778
Target:  5'- cGGGCGgCGgCgGcgGGCGggcgGCAGGGCa -3'
miRNA:   3'- -UCCGCgGCgGgCuaCCGCg---UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 154170 0.72 0.239732
Target:  5'- cGGCGUagGCCCGGagccgGaGCGCGuCGGGGCg -3'
miRNA:   3'- uCCGCGg-CGGGCUa----C-CGCGU-GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 154100 0.67 0.489692
Target:  5'- gGGGCGCgGCC----GGCGC-CGGGGa -3'
miRNA:   3'- -UCCGCGgCGGgcuaCCGCGuGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 154052 0.7 0.334564
Target:  5'- gGGGCGCgGCaCGGcugGaGCGC-CGGGGCg -3'
miRNA:   3'- -UCCGCGgCGgGCUa--C-CGCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 153816 0.67 0.46286
Target:  5'- cAGGCGgCGgCaGGcgcGGCGUGCGGGGCc -3'
miRNA:   3'- -UCCGCgGCgGgCUa--CCGCGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 153773 0.69 0.37717
Target:  5'- gGGGCGCUgcgGCCCGcgcuccuugcgcggcGGCgGCGgGGGGCa -3'
miRNA:   3'- -UCCGCGG---CGGGCua-------------CCG-CGUgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 153692 0.7 0.320472
Target:  5'- cGGGgGCCG-CCGccGGCGCAggcuCAGGcGCg -3'
miRNA:   3'- -UCCgCGGCgGGCuaCCGCGU----GUCC-CG- -5'
5183 3' -64.2 NC_001798.1 + 153059 0.79 0.07616
Target:  5'- cGGCGCCGCCCccUGGgGCgggcggagcgGCGGGGCg -3'
miRNA:   3'- uCCGCGGCGGGcuACCgCG----------UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 153031 0.71 0.268586
Target:  5'- cGGGC-CCGCgCGgcGGCGCGCGGuuGGCn -3'
miRNA:   3'- -UCCGcGGCGgGCuaCCGCGUGUC--CCG- -5'
5183 3' -64.2 NC_001798.1 + 152724 0.71 0.274068
Target:  5'- uAGGgGCCGaucagcccacccaCCCGgcGGCGCGCGaGGCu -3'
miRNA:   3'- -UCCgCGGC-------------GGGCuaCCGCGUGUcCCG- -5'
5183 3' -64.2 NC_001798.1 + 152654 0.68 0.411644
Target:  5'- cGGCGCgGCCCugaGUGGUGCccgccccCGGGGa -3'
miRNA:   3'- uCCGCGgCGGGc--UACCGCGu------GUCCCg -5'
5183 3' -64.2 NC_001798.1 + 152223 0.66 0.517227
Target:  5'- cGGGgGuCUGCCgCGgcGGcCGCuCGGGGCc -3'
miRNA:   3'- -UCCgC-GGCGG-GCuaCC-GCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 151592 0.69 0.364088
Target:  5'- uGGgGCUGCCC--UGGCGCucgGCcgGGGGCc -3'
miRNA:   3'- uCCgCGGCGGGcuACCGCG---UG--UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 150885 0.67 0.46286
Target:  5'- cGGGUcgcccccgcaccGCCGCCCcc--GCGC-CGGGGCg -3'
miRNA:   3'- -UCCG------------CGGCGGGcuacCGCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 150810 0.76 0.126954
Target:  5'- gGGGCGCCGCCgcugcugcugcuccgCGG-GGCGCcAgGGGGCg -3'
miRNA:   3'- -UCCGCGGCGG---------------GCUaCCGCG-UgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 150709 0.69 0.371745
Target:  5'- -cGCGCCcCCCGccGGC-CGCAGGGg -3'
miRNA:   3'- ucCGCGGcGGGCuaCCGcGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 150621 0.66 0.564389
Target:  5'- gGGGgGCU-CCUG--GGcCGCGCGGGGCu -3'
miRNA:   3'- -UCCgCGGcGGGCuaCC-GCGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 150556 0.75 0.160497
Target:  5'- aAGGagaGCgGCCCGG-GGCcCGCGGGGCg -3'
miRNA:   3'- -UCCg--CGgCGGGCUaCCGcGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 150457 0.75 0.156661
Target:  5'- gGGGCgacgGCCGCgCGggGGCGCGCGGcGCg -3'
miRNA:   3'- -UCCG----CGGCGgGCuaCCGCGUGUCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.