miRNA display CGI


Results 21 - 40 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 150175 0.75 0.149235
Target:  5'- cGGGcCGCCGCCCccuccgcGGCGUGgGGGGCg -3'
miRNA:   3'- -UCC-GCGGCGGGcua----CCGCGUgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 150057 0.74 0.189347
Target:  5'- cGGCGCCGCCCucuUGGCcccCACccccuggGGGGCg -3'
miRNA:   3'- uCCGCGGCGGGcu-ACCGc--GUG-------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 149981 0.76 0.132055
Target:  5'- gGGGCGCggCGCCCGcgGaCGC-CGGGGCg -3'
miRNA:   3'- -UCCGCG--GCGGGCuaCcGCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 149688 0.69 0.349103
Target:  5'- cGGgGCCGCCCucgcGUGGCGCGucuuCcuGGCa -3'
miRNA:   3'- uCCgCGGCGGGc---UACCGCGU----GucCCG- -5'
5183 3' -64.2 NC_001798.1 + 149249 0.73 0.198993
Target:  5'- gGGGCGUCGCCgGccGGCGC---GGGCg -3'
miRNA:   3'- -UCCGCGGCGGgCuaCCGCGuguCCCG- -5'
5183 3' -64.2 NC_001798.1 + 149161 0.73 0.223693
Target:  5'- gAGGCGCCucGgCCGGUGGUccgGUGgGGGGCg -3'
miRNA:   3'- -UCCGCGG--CgGGCUACCG---CGUgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 148419 0.7 0.306829
Target:  5'- uGGGCGCCGgggCGggGGUGgGCAcGGGCg -3'
miRNA:   3'- -UCCGCGGCgg-GCuaCCGCgUGU-CCCG- -5'
5183 3' -64.2 NC_001798.1 + 148282 0.67 0.46286
Target:  5'- cGGGCGUgGCgggcaGGUGuGCGgGCGGGGUg -3'
miRNA:   3'- -UCCGCGgCGgg---CUAC-CGCgUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 147984 0.68 0.435115
Target:  5'- aAGGCGCgUGCCCGGccacagccgugggugUGGCGCccguccccuuccucuACcgcguGGGCg -3'
miRNA:   3'- -UCCGCG-GCGGGCU---------------ACCGCG---------------UGu----CCCG- -5'
5183 3' -64.2 NC_001798.1 + 147191 0.66 0.524676
Target:  5'- aAGGCGucccCCGCCCGGcgguccggcccgGGCccccggcggaGCGCGGGGg -3'
miRNA:   3'- -UCCGC----GGCGGGCUa-----------CCG----------CGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 147166 0.68 0.419936
Target:  5'- cGGGUaGCCGCCC---GGCGC-C-GGGCg -3'
miRNA:   3'- -UCCG-CGGCGGGcuaCCGCGuGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 147095 0.75 0.164419
Target:  5'- cGGCGCCGCgCGuucgcgaaaGGCGCGaaaGGGGCc -3'
miRNA:   3'- uCCGCGGCGgGCua-------CCGCGUg--UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 147031 0.67 0.454089
Target:  5'- gGGGCuugGCCG-CCGA-GGUGCGCcccggccggaGGGGCc -3'
miRNA:   3'- -UCCG---CGGCgGGCUaCCGCGUG----------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 145566 0.69 0.379511
Target:  5'- cGGCGCC-CCCucccGGCGCuucCGGGGUc -3'
miRNA:   3'- uCCGCGGcGGGcua-CCGCGu--GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 144575 0.66 0.545361
Target:  5'- aGGGCgaggacggGCgGCUgGGUGGCGa--GGGGCu -3'
miRNA:   3'- -UCCG--------CGgCGGgCUACCGCgugUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 144093 0.69 0.363328
Target:  5'- cGGGUcCUGCCCGAUGauaaccacGCGCACgucgucgGGGGUa -3'
miRNA:   3'- -UCCGcGGCGGGCUAC--------CGCGUG-------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 143955 0.7 0.327462
Target:  5'- cAGGCaGCCGCggCCGcucAUGcGCGCGuCGGGGUa -3'
miRNA:   3'- -UCCG-CGGCG--GGC---UAC-CGCGU-GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 142481 0.69 0.371745
Target:  5'- cGGGacgGCC-CCCGA-GGCgGCGCGGGGg -3'
miRNA:   3'- -UCCg--CGGcGGGCUaCCG-CGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 142127 0.66 0.554851
Target:  5'- gAGcGCGCUGCCgGAcgcggcacaggUGGUGCACguguuugagucAGGGa -3'
miRNA:   3'- -UC-CGCGGCGGgCU-----------ACCGCGUG-----------UCCCg -5'
5183 3' -64.2 NC_001798.1 + 141118 0.69 0.35654
Target:  5'- cGGGaCGCCGCC----GGCGCAucggcaacCAGGGCc -3'
miRNA:   3'- -UCC-GCGGCGGgcuaCCGCGU--------GUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.