miRNA display CGI


Results 41 - 60 of 328 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 3' -64.2 NC_001798.1 + 139935 0.66 0.564389
Target:  5'- -aGCGg-GCCCuGgcGGCGCACGGGGg -3'
miRNA:   3'- ucCGCggCGGG-CuaCCGCGUGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 139086 0.68 0.435115
Target:  5'- cGGCGCCaguccuccuccagGuCCCGGuacgucgUGGCGUugAGGaGCg -3'
miRNA:   3'- uCCGCGG-------------C-GGGCU-------ACCGCGugUCC-CG- -5'
5183 3' -64.2 NC_001798.1 + 138191 0.66 0.514445
Target:  5'- cGGUGCCGCCCuugccgaacccaggGAgGGUGUggucgacgGCGGGGg -3'
miRNA:   3'- uCCGCGGCGGG--------------CUaCCGCG--------UGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 136632 0.66 0.554851
Target:  5'- cAGaGCuCUGCggGGUGGCGCaaaACAGGGCc -3'
miRNA:   3'- -UC-CGcGGCGggCUACCGCG---UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 135777 0.7 0.341778
Target:  5'- cGGcCGCCgGCCCGccggaggaggccGUGuGCGCGgccCGGGGCg -3'
miRNA:   3'- uCC-GCGG-CGGGC------------UAC-CGCGU---GUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 135589 0.68 0.445408
Target:  5'- -cGCGCCucGCCCccucccUGGCGCcAgAGGGCg -3'
miRNA:   3'- ucCGCGG--CGGGcu----ACCGCG-UgUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 135233 0.73 0.213514
Target:  5'- cGGGCuGCCggaaGCCCGggGGCGgGC-GGGCc -3'
miRNA:   3'- -UCCG-CGG----CGGGCuaCCGCgUGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 134986 0.73 0.198993
Target:  5'- uGGGgGCCugGCCCGcggugGGCGC-CAGGGUc -3'
miRNA:   3'- -UCCgCGG--CGGGCua---CCGCGuGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 134917 0.72 0.228936
Target:  5'- cGGcCGCCGCcgccgCCGAgucGGCGCgugaccugguGCGGGGCg -3'
miRNA:   3'- uCC-GCGGCG-----GGCUa--CCGCG----------UGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 134449 0.66 0.526545
Target:  5'- -cGCGUCG-CCGAgcaccccGGCGCGCGGuuGGCg -3'
miRNA:   3'- ucCGCGGCgGGCUa------CCGCGUGUC--CCG- -5'
5183 3' -64.2 NC_001798.1 + 133732 0.66 0.516299
Target:  5'- gGGGCGCgCGCUucaaGcUGcGCGCGCccgcgugGGGGCg -3'
miRNA:   3'- -UCCGCG-GCGGg---CuAC-CGCGUG-------UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 132670 0.69 0.363328
Target:  5'- aGGGCGCUGCgacgcgucgcacgCCGAcgcGGCGCaggcGCGGGGg -3'
miRNA:   3'- -UCCGCGGCG-------------GGCUa--CCGCG----UGUCCCg -5'
5183 3' -64.2 NC_001798.1 + 132141 0.79 0.080121
Target:  5'- -uGCGCCGCCgGGggccGGCGgGCGGGGCg -3'
miRNA:   3'- ucCGCGGCGGgCUa---CCGCgUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 131554 0.67 0.46022
Target:  5'- cGaGCGCCccgacgGCCCGGUGcguaacugugguccGCGCGCcaauGGGCu -3'
miRNA:   3'- uC-CGCGG------CGGGCUAC--------------CGCGUGu---CCCG- -5'
5183 3' -64.2 NC_001798.1 + 131366 0.67 0.46286
Target:  5'- cGGCGCgGCCuCGggGGaucccCugGGGGCc -3'
miRNA:   3'- uCCGCGgCGG-GCuaCCgc---GugUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 130085 0.67 0.46286
Target:  5'- cGGCGUCgggcacagGCCCGG-GGCguuGCACucGGGCg -3'
miRNA:   3'- uCCGCGG--------CGGGCUaCCG---CGUGu-CCCG- -5'
5183 3' -64.2 NC_001798.1 + 129293 0.66 0.564389
Target:  5'- cAGGCaCCGCgCG--GGCGCGgaggAGGGCg -3'
miRNA:   3'- -UCCGcGGCGgGCuaCCGCGUg---UCCCG- -5'
5183 3' -64.2 NC_001798.1 + 128883 0.68 0.419936
Target:  5'- cGGCGaUCGCCgGA-GGCGUuCcGGGCg -3'
miRNA:   3'- uCCGC-GGCGGgCUaCCGCGuGuCCCG- -5'
5183 3' -64.2 NC_001798.1 + 128413 0.7 0.306829
Target:  5'- cGGCGgggccugacgaCCGCCuccacgcugCGGUggGGCGCGCAGGGUc -3'
miRNA:   3'- uCCGC-----------GGCGG---------GCUA--CCGCGUGUCCCG- -5'
5183 3' -64.2 NC_001798.1 + 125691 0.73 0.218553
Target:  5'- gGGGCGaaggaGUCCGAcgucgGGCGCGCgcgGGGGCg -3'
miRNA:   3'- -UCCGCgg---CGGGCUa----CCGCGUG---UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.