Results 41 - 60 of 328 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5183 | 3' | -64.2 | NC_001798.1 | + | 139935 | 0.66 | 0.564389 |
Target: 5'- -aGCGg-GCCCuGgcGGCGCACGGGGg -3' miRNA: 3'- ucCGCggCGGG-CuaCCGCGUGUCCCg -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 139086 | 0.68 | 0.435115 |
Target: 5'- cGGCGCCaguccuccuccagGuCCCGGuacgucgUGGCGUugAGGaGCg -3' miRNA: 3'- uCCGCGG-------------C-GGGCU-------ACCGCGugUCC-CG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 138191 | 0.66 | 0.514445 |
Target: 5'- cGGUGCCGCCCuugccgaacccaggGAgGGUGUggucgacgGCGGGGg -3' miRNA: 3'- uCCGCGGCGGG--------------CUaCCGCG--------UGUCCCg -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 136632 | 0.66 | 0.554851 |
Target: 5'- cAGaGCuCUGCggGGUGGCGCaaaACAGGGCc -3' miRNA: 3'- -UC-CGcGGCGggCUACCGCG---UGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 135777 | 0.7 | 0.341778 |
Target: 5'- cGGcCGCCgGCCCGccggaggaggccGUGuGCGCGgccCGGGGCg -3' miRNA: 3'- uCC-GCGG-CGGGC------------UAC-CGCGU---GUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 135589 | 0.68 | 0.445408 |
Target: 5'- -cGCGCCucGCCCccucccUGGCGCcAgAGGGCg -3' miRNA: 3'- ucCGCGG--CGGGcu----ACCGCG-UgUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 135233 | 0.73 | 0.213514 |
Target: 5'- cGGGCuGCCggaaGCCCGggGGCGgGC-GGGCc -3' miRNA: 3'- -UCCG-CGG----CGGGCuaCCGCgUGuCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 134986 | 0.73 | 0.198993 |
Target: 5'- uGGGgGCCugGCCCGcggugGGCGC-CAGGGUc -3' miRNA: 3'- -UCCgCGG--CGGGCua---CCGCGuGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 134917 | 0.72 | 0.228936 |
Target: 5'- cGGcCGCCGCcgccgCCGAgucGGCGCgugaccugguGCGGGGCg -3' miRNA: 3'- uCC-GCGGCG-----GGCUa--CCGCG----------UGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 134449 | 0.66 | 0.526545 |
Target: 5'- -cGCGUCG-CCGAgcaccccGGCGCGCGGuuGGCg -3' miRNA: 3'- ucCGCGGCgGGCUa------CCGCGUGUC--CCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 133732 | 0.66 | 0.516299 |
Target: 5'- gGGGCGCgCGCUucaaGcUGcGCGCGCccgcgugGGGGCg -3' miRNA: 3'- -UCCGCG-GCGGg---CuAC-CGCGUG-------UCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 132670 | 0.69 | 0.363328 |
Target: 5'- aGGGCGCUGCgacgcgucgcacgCCGAcgcGGCGCaggcGCGGGGg -3' miRNA: 3'- -UCCGCGGCG-------------GGCUa--CCGCG----UGUCCCg -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 132141 | 0.79 | 0.080121 |
Target: 5'- -uGCGCCGCCgGGggccGGCGgGCGGGGCg -3' miRNA: 3'- ucCGCGGCGGgCUa---CCGCgUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 131554 | 0.67 | 0.46022 |
Target: 5'- cGaGCGCCccgacgGCCCGGUGcguaacugugguccGCGCGCcaauGGGCu -3' miRNA: 3'- uC-CGCGG------CGGGCUAC--------------CGCGUGu---CCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 131366 | 0.67 | 0.46286 |
Target: 5'- cGGCGCgGCCuCGggGGaucccCugGGGGCc -3' miRNA: 3'- uCCGCGgCGG-GCuaCCgc---GugUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 130085 | 0.67 | 0.46286 |
Target: 5'- cGGCGUCgggcacagGCCCGG-GGCguuGCACucGGGCg -3' miRNA: 3'- uCCGCGG--------CGGGCUaCCG---CGUGu-CCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 129293 | 0.66 | 0.564389 |
Target: 5'- cAGGCaCCGCgCG--GGCGCGgaggAGGGCg -3' miRNA: 3'- -UCCGcGGCGgGCuaCCGCGUg---UCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 128883 | 0.68 | 0.419936 |
Target: 5'- cGGCGaUCGCCgGA-GGCGUuCcGGGCg -3' miRNA: 3'- uCCGC-GGCGGgCUaCCGCGuGuCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 128413 | 0.7 | 0.306829 |
Target: 5'- cGGCGgggccugacgaCCGCCuccacgcugCGGUggGGCGCGCAGGGUc -3' miRNA: 3'- uCCGC-----------GGCGG---------GCUA--CCGCGUGUCCCG- -5' |
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5183 | 3' | -64.2 | NC_001798.1 | + | 125691 | 0.73 | 0.218553 |
Target: 5'- gGGGCGaaggaGUCCGAcgucgGGCGCGCgcgGGGGCg -3' miRNA: 3'- -UCCGCgg---CGGGCUa----CCGCGUG---UCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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