miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 5' -59.3 NC_001798.1 + 96030 0.66 0.777222
Target:  5'- cGGCGGGGcggGCGGgCGGGCGacGGGCa- -3'
miRNA:   3'- uUUGUCCCa--CGCCaGCCCGC--CUUGga -5'
5183 5' -59.3 NC_001798.1 + 446 0.66 0.729988
Target:  5'- -cACGGGGcUGCGGUCccGCGGccGCCUc -3'
miRNA:   3'- uuUGUCCC-ACGCCAGccCGCCu-UGGA- -5'
5183 5' -59.3 NC_001798.1 + 132148 0.66 0.729988
Target:  5'- --cCGGGG-GcCGG-CGGGCGGGGCg- -3'
miRNA:   3'- uuuGUCCCaC-GCCaGCCCGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 3011 0.66 0.739634
Target:  5'- -cGCGGGGgcGCGG-CGGGcCGGGcuccgGCCa -3'
miRNA:   3'- uuUGUCCCa-CGCCaGCCC-GCCU-----UGGa -5'
5183 5' -59.3 NC_001798.1 + 149398 0.66 0.739634
Target:  5'- -cGCGGGGgGC-GUCGGGUagucggGGGGCCUc -3'
miRNA:   3'- uuUGUCCCaCGcCAGCCCG------CCUUGGA- -5'
5183 5' -59.3 NC_001798.1 + 149661 0.66 0.739634
Target:  5'- cGGGCGccGGGUcGCGGgcccCGGGCucGGGGCCg -3'
miRNA:   3'- -UUUGU--CCCA-CGCCa---GCCCG--CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 66441 0.66 0.74919
Target:  5'- uGAUAGGGcguguaUGC-GUUGGGgGGGACCg -3'
miRNA:   3'- uUUGUCCC------ACGcCAGCCCgCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 102224 0.66 0.74919
Target:  5'- cGACcGGGcGCGGcUCgGGGCGG-GCCUc -3'
miRNA:   3'- uUUGuCCCaCGCC-AG-CCCGCCuUGGA- -5'
5183 5' -59.3 NC_001798.1 + 61324 0.66 0.758645
Target:  5'- -cACAGGGgcgGCGGgcUUGGGUGucccGGACCg -3'
miRNA:   3'- uuUGUCCCa--CGCC--AGCCCGC----CUUGGa -5'
5183 5' -59.3 NC_001798.1 + 6515 0.66 0.767992
Target:  5'- gGGACGGGGggacggGgGGaCGGGgGGAcggGCCg -3'
miRNA:   3'- -UUUGUCCCa-----CgCCaGCCCgCCU---UGGa -5'
5183 5' -59.3 NC_001798.1 + 45926 0.66 0.767992
Target:  5'- --uCGGGGggugGCGGUCGcgucCGGAACCc -3'
miRNA:   3'- uuuGUCCCa---CGCCAGCcc--GCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 42174 0.66 0.767992
Target:  5'- -cGCGGGGccGCGGaaaacaUGGGCGGGGCg- -3'
miRNA:   3'- uuUGUCCCa-CGCCa-----GCCCGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 106068 0.66 0.776305
Target:  5'- gGAGgGGGGccuuUGCGGUCuGGCGGucgcggcGACCc -3'
miRNA:   3'- -UUUgUCCC----ACGCCAGcCCGCC-------UUGGa -5'
5183 5' -59.3 NC_001798.1 + 142948 0.67 0.690669
Target:  5'- -cACGGGGa-CGGcCGGGCaGAGCCg -3'
miRNA:   3'- uuUGUCCCacGCCaGCCCGcCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 56982 0.67 0.690669
Target:  5'- cGugGGGGUGgaUGGUCagcgacggaGGGCGGAACa- -3'
miRNA:   3'- uUugUCCCAC--GCCAG---------CCCGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 51472 0.67 0.690669
Target:  5'- -cGCGGGccGCGuGUCGGGCccGGAGCUg -3'
miRNA:   3'- uuUGUCCcaCGC-CAGCCCG--CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 36289 0.67 0.704545
Target:  5'- gGGGgGGGGUgccguggguguggcgGCGGggcgCGGGCcGGGGCCg -3'
miRNA:   3'- -UUUgUCCCA---------------CGCCa---GCCCG-CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 151837 0.67 0.710457
Target:  5'- ---gAGGGcGCGGggcgUGaGGCGGGACCc -3'
miRNA:   3'- uuugUCCCaCGCCa---GC-CCGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 14329 0.67 0.714386
Target:  5'- uGGGgAGGcGUGCGGUCGcGuuuguuguaucggacGCGGGGCCg -3'
miRNA:   3'- -UUUgUCC-CACGCCAGC-C---------------CGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 10308 0.67 0.690669
Target:  5'- cGACGGGGggGgGGUUGGGgGGGgaacgcugACCg -3'
miRNA:   3'- uUUGUCCCa-CgCCAGCCCgCCU--------UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.