miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 5' -59.3 NC_001798.1 + 67 0.67 0.670691
Target:  5'- aAGGCGGGcGgcgGCGG-CGGGCGGGcggcagggcaGCCc -3'
miRNA:   3'- -UUUGUCC-Ca--CGCCaGCCCGCCU----------UGGa -5'
5183 5' -59.3 NC_001798.1 + 446 0.66 0.729988
Target:  5'- -cACGGGGcUGCGGUCccGCGGccGCCUc -3'
miRNA:   3'- uuUGUCCC-ACGCCAGccCGCCu-UGGA- -5'
5183 5' -59.3 NC_001798.1 + 3011 0.66 0.739634
Target:  5'- -cGCGGGGgcGCGG-CGGGcCGGGcuccgGCCa -3'
miRNA:   3'- uuUGUCCCa-CGCCaGCCC-GCCU-----UGGa -5'
5183 5' -59.3 NC_001798.1 + 6515 0.66 0.767992
Target:  5'- gGGACGGGGggacggGgGGaCGGGgGGAcggGCCg -3'
miRNA:   3'- -UUUGUCCCa-----CgCCaGCCCgCCU---UGGa -5'
5183 5' -59.3 NC_001798.1 + 10308 0.67 0.690669
Target:  5'- cGACGGGGggGgGGUUGGGgGGGgaacgcugACCg -3'
miRNA:   3'- uUUGUCCCa-CgCCAGCCCgCCU--------UGGa -5'
5183 5' -59.3 NC_001798.1 + 11175 0.76 0.245843
Target:  5'- cGAUGGGG-GCGGUgGGGCGG-GCCUg -3'
miRNA:   3'- uUUGUCCCaCGCCAgCCCGCCuUGGA- -5'
5183 5' -59.3 NC_001798.1 + 12886 0.72 0.43751
Target:  5'- cAGCAGGGUGCuGGUguaCGGGggcuUGGGGCCg -3'
miRNA:   3'- uUUGUCCCACG-CCA---GCCC----GCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 14329 0.67 0.714386
Target:  5'- uGGGgAGGcGUGCGGUCGcGuuuguuguaucggacGCGGGGCCg -3'
miRNA:   3'- -UUUgUCC-CACGCCAGC-C---------------CGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 15345 0.7 0.521138
Target:  5'- uAGCGGGGggcgagGCGGUgaGGGgGGAAUCg -3'
miRNA:   3'- uUUGUCCCa-----CGCCAg-CCCgCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 16228 0.73 0.35432
Target:  5'- uGugGGGGgGCGGUgGGGCcGGGGCCc -3'
miRNA:   3'- uUugUCCCaCGCCAgCCCG-CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 22356 0.75 0.289529
Target:  5'- gGGGCGGGGccgcgcauaaUGCGGUUccaccuggGGGCGGAACCc -3'
miRNA:   3'- -UUUGUCCC----------ACGCCAG--------CCCGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 26818 0.68 0.6385
Target:  5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGc--- -3'
miRNA:   3'- -UUUGUCCCa-----------CgCCAGCCCGCCUugga -5'
5183 5' -59.3 NC_001798.1 + 26863 0.68 0.6385
Target:  5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGc--- -3'
miRNA:   3'- -UUUGUCCCa-----------CgCCAGCCCGCCUugga -5'
5183 5' -59.3 NC_001798.1 + 26908 0.73 0.37646
Target:  5'- cGGGCGGGGgucggGCGGgcgggggucgggCGGGCGGggUCg -3'
miRNA:   3'- -UUUGUCCCa----CGCCa-----------GCCCGCCuuGGa -5'
5183 5' -59.3 NC_001798.1 + 26952 0.68 0.6385
Target:  5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGc--- -3'
miRNA:   3'- -UUUGUCCCa-----------CgCCAGCCCGCCUugga -5'
5183 5' -59.3 NC_001798.1 + 27012 0.69 0.562279
Target:  5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGcggcacgucucccgcGCCc -3'
miRNA:   3'- -UUUGUCCCa-----------CgCCAGCCCGCCU---------------UGGa -5'
5183 5' -59.3 NC_001798.1 + 27230 0.68 0.620354
Target:  5'- -cGCGGGGgagGCGGccgCGGgggaggcggccGCGGGACCg -3'
miRNA:   3'- uuUGUCCCa--CGCCa--GCC-----------CGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 27336 0.75 0.295568
Target:  5'- uGGCGGGGaaccgugUGCGGgCGGGCGGGugCUu -3'
miRNA:   3'- uUUGUCCC-------ACGCCaGCCCGCCUugGA- -5'
5183 5' -59.3 NC_001798.1 + 30948 0.72 0.428692
Target:  5'- cGGGCGGGGggcgggcgGgGGUCGGGCgGGggUCg -3'
miRNA:   3'- -UUUGUCCCa-------CgCCAGCCCG-CCuuGGa -5'
5183 5' -59.3 NC_001798.1 + 30981 0.72 0.428692
Target:  5'- cGGGCGGGGgucgggcgGgGGUCGGGCgGGggUCg -3'
miRNA:   3'- -UUUGUCCCa-------CgCCAGCCCG-CCuuGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.