miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 5' -59.3 NC_001798.1 + 31036 0.73 0.37004
Target:  5'- cGGGCGGGGgucgggcgGgGGUCGGGCGGGggucgggcacuaACCg -3'
miRNA:   3'- -UUUGUCCCa-------CgCCAGCCCGCCU------------UGGa -5'
5183 5' -59.3 NC_001798.1 + 31149 0.73 0.346639
Target:  5'- -cGCGGGGgcgGCGGUgCGGgggcgacccGCGGAACCUc -3'
miRNA:   3'- uuUGUCCCa--CGCCA-GCC---------CGCCUUGGA- -5'
5183 5' -59.3 NC_001798.1 + 31978 0.67 0.690669
Target:  5'- ---gGGGGUGgGGgccaagaGGGCGGcGCCg -3'
miRNA:   3'- uuugUCCCACgCCag-----CCCGCCuUGGa -5'
5183 5' -59.3 NC_001798.1 + 36082 0.69 0.587188
Target:  5'- -cGCGGGGUaggugggugggcggGUGGUgGGGgGGGGCCc -3'
miRNA:   3'- uuUGUCCCA--------------CGCCAgCCCgCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 36289 0.67 0.704545
Target:  5'- gGGGgGGGGUgccguggguguggcgGCGGggcgCGGGCcGGGGCCg -3'
miRNA:   3'- -UUUgUCCCA---------------CGCCa---GCCCG-CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 36419 0.73 0.378077
Target:  5'- cGGGC-GGG-GCGGUgGGGCGGggUCg -3'
miRNA:   3'- -UUUGuCCCaCGCCAgCCCGCCuuGGa -5'
5183 5' -59.3 NC_001798.1 + 36514 0.75 0.296245
Target:  5'- cGGGCGGGGgcgcgcgGCGGcCGGGCGGGGgCg -3'
miRNA:   3'- -UUUGUCCCa------CGCCaGCCCGCCUUgGa -5'
5183 5' -59.3 NC_001798.1 + 36556 0.75 0.296245
Target:  5'- cGGGCGGGGgcgcgcgGCGGcCGGGCGGGGgCg -3'
miRNA:   3'- -UUUGUCCCa------CGCCaGCCCGCCUUgGa -5'
5183 5' -59.3 NC_001798.1 + 36598 0.75 0.296245
Target:  5'- cGGGCGGGGgcgcgcgGCGGcCGGGCGGGGgCg -3'
miRNA:   3'- -UUUGUCCCa------CGCCaGCCCGCCUUgGa -5'
5183 5' -59.3 NC_001798.1 + 41465 0.69 0.58019
Target:  5'- --cCGGGGgggGCGGUC-GGCGGGcCCa -3'
miRNA:   3'- uuuGUCCCa--CGCCAGcCCGCCUuGGa -5'
5183 5' -59.3 NC_001798.1 + 42174 0.66 0.767992
Target:  5'- -cGCGGGGccGCGGaaaacaUGGGCGGGGCg- -3'
miRNA:   3'- uuUGUCCCa-CGCCa-----GCCCGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 45926 0.66 0.767992
Target:  5'- --uCGGGGggugGCGGUCGcgucCGGAACCc -3'
miRNA:   3'- uuuGUCCCa---CGCCAGCcc--GCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 51334 0.67 0.720259
Target:  5'- gGGGCGGGuGgGCGGUucgCGGGUGGuGCCc -3'
miRNA:   3'- -UUUGUCC-CaCGCCA---GCCCGCCuUGGa -5'
5183 5' -59.3 NC_001798.1 + 51472 0.67 0.690669
Target:  5'- -cGCGGGccGCGuGUCGGGCccGGAGCUg -3'
miRNA:   3'- uuUGUCCcaCGC-CAGCCCG--CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 56510 0.74 0.331636
Target:  5'- cGGCAGGGUggaGCGGaUCGuGGCGGuGCCg -3'
miRNA:   3'- uUUGUCCCA---CGCC-AGC-CCGCCuUGGa -5'
5183 5' -59.3 NC_001798.1 + 56982 0.67 0.690669
Target:  5'- cGugGGGGUGgaUGGUCagcgacggaGGGCGGAACa- -3'
miRNA:   3'- uUugUCCCAC--GCCAG---------CCCGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 57450 0.69 0.550421
Target:  5'- --uCGGGGgccCGGUCuugggGGGCGGGGCCg -3'
miRNA:   3'- uuuGUCCCac-GCCAG-----CCCGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 57525 0.75 0.282933
Target:  5'- gGGGCGuGGGUGUGGUUcgggGGGCGGAugCg -3'
miRNA:   3'- -UUUGU-CCCACGCCAG----CCCGCCUugGa -5'
5183 5' -59.3 NC_001798.1 + 61324 0.66 0.758645
Target:  5'- -cACAGGGgcgGCGGgcUUGGGUGucccGGACCg -3'
miRNA:   3'- uuUGUCCCa--CGCC--AGCCCGC----CUUGGa -5'
5183 5' -59.3 NC_001798.1 + 66441 0.66 0.74919
Target:  5'- uGAUAGGGcguguaUGC-GUUGGGgGGGACCg -3'
miRNA:   3'- uUUGUCCC------ACGcCAGCCCgCCUUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.