miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 5' -59.3 NC_001798.1 + 102224 0.66 0.74919
Target:  5'- cGACcGGGcGCGGcUCgGGGCGG-GCCUc -3'
miRNA:   3'- uUUGuCCCaCGCC-AG-CCCGCCuUGGA- -5'
5183 5' -59.3 NC_001798.1 + 102020 0.71 0.446431
Target:  5'- uGGCGGGGUagcgggGUGGUUGGGCGGGGgucuCCg -3'
miRNA:   3'- uUUGUCCCA------CGCCAGCCCGCCUU----GGa -5'
5183 5' -59.3 NC_001798.1 + 96710 0.72 0.417387
Target:  5'- uGGCGGcGGUGgGGUCGGGCcucaucgugcccccGGAGCUg -3'
miRNA:   3'- uUUGUC-CCACgCCAGCCCG--------------CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 96030 0.66 0.777222
Target:  5'- cGGCGGGGcggGCGGgCGGGCGacGGGCa- -3'
miRNA:   3'- uUUGUCCCa--CGCCaGCCCGC--CUUGga -5'
5183 5' -59.3 NC_001798.1 + 91805 0.73 0.37004
Target:  5'- -cGCGGGGcGUGGggaccgUGGGCGGGGCCc -3'
miRNA:   3'- uuUGUCCCaCGCCa-----GCCCGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 85821 0.77 0.223422
Target:  5'- uGACGGGGggggGCGGgggCGGGCGGGGgCUc -3'
miRNA:   3'- uUUGUCCCa---CGCCa--GCCCGCCUUgGA- -5'
5183 5' -59.3 NC_001798.1 + 74349 0.68 0.630434
Target:  5'- --cCAaGGUGCGGU-GGGCGGGcGCCa -3'
miRNA:   3'- uuuGUcCCACGCCAgCCCGCCU-UGGa -5'
5183 5' -59.3 NC_001798.1 + 66765 0.68 0.620354
Target:  5'- ---uGGGGUGCGG-CGGcgugggccGCGGAAUCg -3'
miRNA:   3'- uuugUCCCACGCCaGCC--------CGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 66441 0.66 0.74919
Target:  5'- uGAUAGGGcguguaUGC-GUUGGGgGGGACCg -3'
miRNA:   3'- uUUGUCCC------ACGcCAGCCCgCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 61324 0.66 0.758645
Target:  5'- -cACAGGGgcgGCGGgcUUGGGUGucccGGACCg -3'
miRNA:   3'- uuUGUCCCa--CGCC--AGCCCGC----CUUGGa -5'
5183 5' -59.3 NC_001798.1 + 57525 0.75 0.282933
Target:  5'- gGGGCGuGGGUGUGGUUcgggGGGCGGAugCg -3'
miRNA:   3'- -UUUGU-CCCACGCCAG----CCCGCCUugGa -5'
5183 5' -59.3 NC_001798.1 + 57450 0.69 0.550421
Target:  5'- --uCGGGGgccCGGUCuugggGGGCGGGGCCg -3'
miRNA:   3'- uuuGUCCCac-GCCAG-----CCCGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 56982 0.67 0.690669
Target:  5'- cGugGGGGUGgaUGGUCagcgacggaGGGCGGAACa- -3'
miRNA:   3'- uUugUCCCAC--GCCAG---------CCCGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 56510 0.74 0.331636
Target:  5'- cGGCAGGGUggaGCGGaUCGuGGCGGuGCCg -3'
miRNA:   3'- uUUGUCCCA---CGCC-AGC-CCGCCuUGGa -5'
5183 5' -59.3 NC_001798.1 + 51472 0.67 0.690669
Target:  5'- -cGCGGGccGCGuGUCGGGCccGGAGCUg -3'
miRNA:   3'- uuUGUCCcaCGC-CAGCCCG--CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 51334 0.67 0.720259
Target:  5'- gGGGCGGGuGgGCGGUucgCGGGUGGuGCCc -3'
miRNA:   3'- -UUUGUCC-CaCGCCA---GCCCGCCuUGGa -5'
5183 5' -59.3 NC_001798.1 + 45926 0.66 0.767992
Target:  5'- --uCGGGGggugGCGGUCGcgucCGGAACCc -3'
miRNA:   3'- uuuGUCCCa---CGCCAGCcc--GCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 42174 0.66 0.767992
Target:  5'- -cGCGGGGccGCGGaaaacaUGGGCGGGGCg- -3'
miRNA:   3'- uuUGUCCCa-CGCCa-----GCCCGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 41465 0.69 0.58019
Target:  5'- --cCGGGGgggGCGGUC-GGCGGGcCCa -3'
miRNA:   3'- uuuGUCCCa--CGCCAGcCCGCCUuGGa -5'
5183 5' -59.3 NC_001798.1 + 36598 0.75 0.296245
Target:  5'- cGGGCGGGGgcgcgcgGCGGcCGGGCGGGGgCg -3'
miRNA:   3'- -UUUGUCCCa------CGCCaGCCCGCCUUgGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.