miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 5' -59.3 NC_001798.1 + 154405 0.67 0.670691
Target:  5'- aAGGCGGGcGgcgGCGG-CGGGCGGGcggcagggcaGCCc -3'
miRNA:   3'- -UUUGUCC-Ca--CGCCaGCCCGCCU----------UGGa -5'
5183 5' -59.3 NC_001798.1 + 153806 0.68 0.610282
Target:  5'- cGGCGGGGggcagGCGG-CGGcaggcgcggcguGCGGGGCCUc -3'
miRNA:   3'- uUUGUCCCa----CGCCaGCC------------CGCCUUGGA- -5'
5183 5' -59.3 NC_001798.1 + 153002 0.7 0.51151
Target:  5'- cGGCGcGGG-GCGGUCgccgGGGCGGAGuCCg -3'
miRNA:   3'- uUUGU-CCCaCGCCAG----CCCGCCUU-GGa -5'
5183 5' -59.3 NC_001798.1 + 151837 0.67 0.710457
Target:  5'- ---gAGGGcGCGGggcgUGaGGCGGGACCc -3'
miRNA:   3'- uuugUCCCaCGCCa---GC-CCGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 151171 0.67 0.670691
Target:  5'- -cACGGGGggGUGGgcgacaGGGCGcGGACCg -3'
miRNA:   3'- uuUGUCCCa-CGCCag----CCCGC-CUUGGa -5'
5183 5' -59.3 NC_001798.1 + 150417 0.7 0.521138
Target:  5'- -cACGGGGgcgGCGG-CGGcGCGGGGCg- -3'
miRNA:   3'- uuUGUCCCa--CGCCaGCC-CGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 149661 0.66 0.739634
Target:  5'- cGGGCGccGGGUcGCGGgcccCGGGCucGGGGCCg -3'
miRNA:   3'- -UUUGU--CCCA-CGCCa---GCCCG--CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 149451 0.75 0.270099
Target:  5'- gGAGCAGGGUGCGG-CGGcuccacGCgGGGGCCg -3'
miRNA:   3'- -UUUGUCCCACGCCaGCC------CG-CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 149398 0.66 0.739634
Target:  5'- -cGCGGGGgGC-GUCGGGUagucggGGGGCCUc -3'
miRNA:   3'- uuUGUCCCaCGcCAGCCCG------CCUUGGA- -5'
5183 5' -59.3 NC_001798.1 + 148398 0.72 0.41998
Target:  5'- cGGGCAGGuGUGCGGgcgGGGUGGGcGCCg -3'
miRNA:   3'- -UUUGUCC-CACGCCag-CCCGCCU-UGGa -5'
5183 5' -59.3 NC_001798.1 + 148291 0.7 0.540599
Target:  5'- cGGGCAGGuGUGCGGgcgGGGUGGggUg- -3'
miRNA:   3'- -UUUGUCC-CACGCCag-CCCGCCuuGga -5'
5183 5' -59.3 NC_001798.1 + 146294 0.74 0.324316
Target:  5'- cGAGCGGGGaguggGCGGcCGGGCGGGAg-- -3'
miRNA:   3'- -UUUGUCCCa----CGCCaGCCCGCCUUgga -5'
5183 5' -59.3 NC_001798.1 + 142948 0.67 0.690669
Target:  5'- -cACGGGGa-CGGcCGGGCaGAGCCg -3'
miRNA:   3'- uuUGUCCCacGCCaGCCCGcCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 138212 0.7 0.501956
Target:  5'- cAGGgAGGGUGUGGUCGacGGCGGGGgUg -3'
miRNA:   3'- -UUUgUCCCACGCCAGC--CCGCCUUgGa -5'
5183 5' -59.3 NC_001798.1 + 132148 0.66 0.729988
Target:  5'- --cCGGGG-GcCGG-CGGGCGGGGCg- -3'
miRNA:   3'- uuuGUCCCaC-GCCaGCCCGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 121777 0.67 0.680699
Target:  5'- --cCAGGcGUccuCGGucUCGGGCGGGGCCg -3'
miRNA:   3'- uuuGUCC-CAc--GCC--AGCCCGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 119512 0.69 0.570222
Target:  5'- gAGGCGGGGgcagGCGuGUUGGGaaGGGACCc -3'
miRNA:   3'- -UUUGUCCCa---CGC-CAGCCCg-CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 106068 0.66 0.776305
Target:  5'- gGAGgGGGGccuuUGCGGUCuGGCGGucgcggcGACCc -3'
miRNA:   3'- -UUUgUCCC----ACGCCAGcCCGCC-------UUGGa -5'
5183 5' -59.3 NC_001798.1 + 103177 1.04 0.002744
Target:  5'- cAAACAGGGUGCGGUCGGGCGGAACCUc -3'
miRNA:   3'- -UUUGUCCCACGCCAGCCCGCCUUGGA- -5'
5183 5' -59.3 NC_001798.1 + 102485 0.69 0.590193
Target:  5'- gAGGCGGGuaGUGCGGggaCGGGCcGGcGCCg -3'
miRNA:   3'- -UUUGUCC--CACGCCa--GCCCG-CCuUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.