Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5183 | 5' | -59.3 | NC_001798.1 | + | 61324 | 0.66 | 0.758645 |
Target: 5'- -cACAGGGgcgGCGGgcUUGGGUGucccGGACCg -3' miRNA: 3'- uuUGUCCCa--CGCC--AGCCCGC----CUUGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 6515 | 0.66 | 0.767992 |
Target: 5'- gGGACGGGGggacggGgGGaCGGGgGGAcggGCCg -3' miRNA: 3'- -UUUGUCCCa-----CgCCaGCCCgCCU---UGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 45926 | 0.66 | 0.767992 |
Target: 5'- --uCGGGGggugGCGGUCGcgucCGGAACCc -3' miRNA: 3'- uuuGUCCCa---CGCCAGCcc--GCCUUGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 42174 | 0.66 | 0.767992 |
Target: 5'- -cGCGGGGccGCGGaaaacaUGGGCGGGGCg- -3' miRNA: 3'- uuUGUCCCa-CGCCa-----GCCCGCCUUGga -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 106068 | 0.66 | 0.776305 |
Target: 5'- gGAGgGGGGccuuUGCGGUCuGGCGGucgcggcGACCc -3' miRNA: 3'- -UUUgUCCC----ACGCCAGcCCGCC-------UUGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 14329 | 0.67 | 0.714386 |
Target: 5'- uGGGgAGGcGUGCGGUCGcGuuuguuguaucggacGCGGGGCCg -3' miRNA: 3'- -UUUgUCC-CACGCCAGC-C---------------CGCCUUGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 151837 | 0.67 | 0.710457 |
Target: 5'- ---gAGGGcGCGGggcgUGaGGCGGGACCc -3' miRNA: 3'- uuugUCCCaCGCCa---GC-CCGCCUUGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 26818 | 0.68 | 0.6385 |
Target: 5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGc--- -3' miRNA: 3'- -UUUGUCCCa-----------CgCCAGCCCGCCUugga -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 26863 | 0.68 | 0.6385 |
Target: 5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGc--- -3' miRNA: 3'- -UUUGUCCCa-----------CgCCAGCCCGCCUugga -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 26952 | 0.68 | 0.6385 |
Target: 5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGc--- -3' miRNA: 3'- -UUUGUCCCa-----------CgCCAGCCCGCCUugga -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 151171 | 0.67 | 0.670691 |
Target: 5'- -cACGGGGggGUGGgcgacaGGGCGcGGACCg -3' miRNA: 3'- uuUGUCCCa-CGCCag----CCCGC-CUUGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 67 | 0.67 | 0.670691 |
Target: 5'- aAGGCGGGcGgcgGCGG-CGGGCGGGcggcagggcaGCCc -3' miRNA: 3'- -UUUGUCC-Ca--CGCCaGCCCGCCU----------UGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 154405 | 0.67 | 0.670691 |
Target: 5'- aAGGCGGGcGgcgGCGG-CGGGCGGGcggcagggcaGCCc -3' miRNA: 3'- -UUUGUCC-Ca--CGCCaGCCCGCCU----------UGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 121777 | 0.67 | 0.680699 |
Target: 5'- --cCAGGcGUccuCGGucUCGGGCGGGGCCg -3' miRNA: 3'- uuuGUCC-CAc--GCC--AGCCCGCCUUGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 31978 | 0.67 | 0.690669 |
Target: 5'- ---gGGGGUGgGGgccaagaGGGCGGcGCCg -3' miRNA: 3'- uuugUCCCACgCCag-----CCCGCCuUGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 10308 | 0.67 | 0.690669 |
Target: 5'- cGACGGGGggGgGGUUGGGgGGGgaacgcugACCg -3' miRNA: 3'- uUUGUCCCa-CgCCAGCCCgCCU--------UGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 142948 | 0.67 | 0.690669 |
Target: 5'- -cACGGGGa-CGGcCGGGCaGAGCCg -3' miRNA: 3'- uuUGUCCCacGCCaGCCCGcCUUGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 56982 | 0.67 | 0.690669 |
Target: 5'- cGugGGGGUGgaUGGUCagcgacggaGGGCGGAACa- -3' miRNA: 3'- uUugUCCCAC--GCCAG---------CCCGCCUUGga -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 51472 | 0.67 | 0.690669 |
Target: 5'- -cGCGGGccGCGuGUCGGGCccGGAGCUg -3' miRNA: 3'- uuUGUCCcaCGC-CAGCCCG--CCUUGGa -5' |
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5183 | 5' | -59.3 | NC_001798.1 | + | 36289 | 0.67 | 0.704545 |
Target: 5'- gGGGgGGGGUgccguggguguggcgGCGGggcgCGGGCcGGGGCCg -3' miRNA: 3'- -UUUgUCCCA---------------CGCCa---GCCCG-CCUUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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