miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 5' -59.3 NC_001798.1 + 26863 0.68 0.6385
Target:  5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGc--- -3'
miRNA:   3'- -UUUGUCCCa-----------CgCCAGCCCGCCUugga -5'
5183 5' -59.3 NC_001798.1 + 26952 0.68 0.6385
Target:  5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGc--- -3'
miRNA:   3'- -UUUGUCCCa-----------CgCCAGCCCGCCUugga -5'
5183 5' -59.3 NC_001798.1 + 67 0.67 0.670691
Target:  5'- aAGGCGGGcGgcgGCGG-CGGGCGGGcggcagggcaGCCc -3'
miRNA:   3'- -UUUGUCC-Ca--CGCCaGCCCGCCU----------UGGa -5'
5183 5' -59.3 NC_001798.1 + 151171 0.67 0.670691
Target:  5'- -cACGGGGggGUGGgcgacaGGGCGcGGACCg -3'
miRNA:   3'- uuUGUCCCa-CGCCag----CCCGC-CUUGGa -5'
5183 5' -59.3 NC_001798.1 + 154405 0.67 0.670691
Target:  5'- aAGGCGGGcGgcgGCGG-CGGGCGGGcggcagggcaGCCc -3'
miRNA:   3'- -UUUGUCC-Ca--CGCCaGCCCGCCU----------UGGa -5'
5183 5' -59.3 NC_001798.1 + 121777 0.67 0.680699
Target:  5'- --cCAGGcGUccuCGGucUCGGGCGGGGCCg -3'
miRNA:   3'- uuuGUCC-CAc--GCC--AGCCCGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 31978 0.67 0.690669
Target:  5'- ---gGGGGUGgGGgccaagaGGGCGGcGCCg -3'
miRNA:   3'- uuugUCCCACgCCag-----CCCGCCuUGGa -5'
5183 5' -59.3 NC_001798.1 + 10308 0.67 0.690669
Target:  5'- cGACGGGGggGgGGUUGGGgGGGgaacgcugACCg -3'
miRNA:   3'- uUUGUCCCa-CgCCAGCCCgCCU--------UGGa -5'
5183 5' -59.3 NC_001798.1 + 142948 0.67 0.690669
Target:  5'- -cACGGGGa-CGGcCGGGCaGAGCCg -3'
miRNA:   3'- uuUGUCCCacGCCaGCCCGcCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 56982 0.67 0.690669
Target:  5'- cGugGGGGUGgaUGGUCagcgacggaGGGCGGAACa- -3'
miRNA:   3'- uUugUCCCAC--GCCAG---------CCCGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 51472 0.67 0.690669
Target:  5'- -cGCGGGccGCGuGUCGGGCccGGAGCUg -3'
miRNA:   3'- uuUGUCCcaCGC-CAGCCCG--CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 36289 0.67 0.704545
Target:  5'- gGGGgGGGGUgccguggguguggcgGCGGggcgCGGGCcGGGGCCg -3'
miRNA:   3'- -UUUgUCCCA---------------CGCCa---GCCCG-CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 151837 0.67 0.710457
Target:  5'- ---gAGGGcGCGGggcgUGaGGCGGGACCc -3'
miRNA:   3'- uuugUCCCaCGCCa---GC-CCGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 14329 0.67 0.714386
Target:  5'- uGGGgAGGcGUGCGGUCGcGuuuguuguaucggacGCGGGGCCg -3'
miRNA:   3'- -UUUgUCC-CACGCCAGC-C---------------CGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 51334 0.67 0.720259
Target:  5'- gGGGCGGGuGgGCGGUucgCGGGUGGuGCCc -3'
miRNA:   3'- -UUUGUCC-CaCGCCA---GCCCGCCuUGGa -5'
5183 5' -59.3 NC_001798.1 + 446 0.66 0.729988
Target:  5'- -cACGGGGcUGCGGUCccGCGGccGCCUc -3'
miRNA:   3'- uuUGUCCC-ACGCCAGccCGCCu-UGGA- -5'
5183 5' -59.3 NC_001798.1 + 132148 0.66 0.729988
Target:  5'- --cCGGGG-GcCGG-CGGGCGGGGCg- -3'
miRNA:   3'- uuuGUCCCaC-GCCaGCCCGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 3011 0.66 0.739634
Target:  5'- -cGCGGGGgcGCGG-CGGGcCGGGcuccgGCCa -3'
miRNA:   3'- uuUGUCCCa-CGCCaGCCC-GCCU-----UGGa -5'
5183 5' -59.3 NC_001798.1 + 149398 0.66 0.739634
Target:  5'- -cGCGGGGgGC-GUCGGGUagucggGGGGCCUc -3'
miRNA:   3'- uuUGUCCCaCGcCAGCCCG------CCUUGGA- -5'
5183 5' -59.3 NC_001798.1 + 149661 0.66 0.739634
Target:  5'- cGGGCGccGGGUcGCGGgcccCGGGCucGGGGCCg -3'
miRNA:   3'- -UUUGU--CCCA-CGCCa---GCCCG--CCUUGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.