miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 5' -59.3 NC_001798.1 + 150417 0.7 0.521138
Target:  5'- -cACGGGGgcgGCGG-CGGcGCGGGGCg- -3'
miRNA:   3'- uuUGUCCCa--CGCCaGCC-CGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 15345 0.7 0.521138
Target:  5'- uAGCGGGGggcgagGCGGUgaGGGgGGAAUCg -3'
miRNA:   3'- uUUGUCCCa-----CGCCAg-CCCgCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 153002 0.7 0.51151
Target:  5'- cGGCGcGGG-GCGGUCgccgGGGCGGAGuCCg -3'
miRNA:   3'- uUUGU-CCCaCGCCAG----CCCGCCUU-GGa -5'
5183 5' -59.3 NC_001798.1 + 138212 0.7 0.501956
Target:  5'- cAGGgAGGGUGUGGUCGacGGCGGGGgUg -3'
miRNA:   3'- -UUUgUCCCACGCCAGC--CCGCCUUgGa -5'
5183 5' -59.3 NC_001798.1 + 102020 0.71 0.446431
Target:  5'- uGGCGGGGUagcgggGUGGUUGGGCGGGGgucuCCg -3'
miRNA:   3'- uUUGUCCCA------CGCCAGCCCGCCUU----GGa -5'
5183 5' -59.3 NC_001798.1 + 12886 0.72 0.43751
Target:  5'- cAGCAGGGUGCuGGUguaCGGGggcuUGGGGCCg -3'
miRNA:   3'- uUUGUCCCACG-CCA---GCCC----GCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 30948 0.72 0.428692
Target:  5'- cGGGCGGGGggcgggcgGgGGUCGGGCgGGggUCg -3'
miRNA:   3'- -UUUGUCCCa-------CgCCAGCCCG-CCuuGGa -5'
5183 5' -59.3 NC_001798.1 + 30981 0.72 0.428692
Target:  5'- cGGGCGGGGgucgggcgGgGGUCGGGCgGGggUCg -3'
miRNA:   3'- -UUUGUCCCa-------CgCCAGCCCG-CCuuGGa -5'
5183 5' -59.3 NC_001798.1 + 148398 0.72 0.41998
Target:  5'- cGGGCAGGuGUGCGGgcgGGGUGGGcGCCg -3'
miRNA:   3'- -UUUGUCC-CACGCCag-CCCGCCU-UGGa -5'
5183 5' -59.3 NC_001798.1 + 96710 0.72 0.417387
Target:  5'- uGGCGGcGGUGgGGUCGGGCcucaucgugcccccGGAGCUg -3'
miRNA:   3'- uUUGUC-CCACgCCAGCCCG--------------CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 36419 0.73 0.378077
Target:  5'- cGGGC-GGG-GCGGUgGGGCGGggUCg -3'
miRNA:   3'- -UUUGuCCCaCGCCAgCCCGCCuuGGa -5'
5183 5' -59.3 NC_001798.1 + 26908 0.73 0.37646
Target:  5'- cGGGCGGGGgucggGCGGgcgggggucgggCGGGCGGggUCg -3'
miRNA:   3'- -UUUGUCCCa----CGCCa-----------GCCCGCCuuGGa -5'
5183 5' -59.3 NC_001798.1 + 31036 0.73 0.37004
Target:  5'- cGGGCGGGGgucgggcgGgGGUCGGGCGGGggucgggcacuaACCg -3'
miRNA:   3'- -UUUGUCCCa-------CgCCAGCCCGCCU------------UGGa -5'
5183 5' -59.3 NC_001798.1 + 91805 0.73 0.37004
Target:  5'- -cGCGGGGcGUGGggaccgUGGGCGGGGCCc -3'
miRNA:   3'- uuUGUCCCaCGCCa-----GCCCGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 16228 0.73 0.35432
Target:  5'- uGugGGGGgGCGGUgGGGCcGGGGCCc -3'
miRNA:   3'- uUugUCCCaCGCCAgCCCG-CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 31149 0.73 0.346639
Target:  5'- -cGCGGGGgcgGCGGUgCGGgggcgacccGCGGAACCUc -3'
miRNA:   3'- uuUGUCCCa--CGCCA-GCC---------CGCCUUGGA- -5'
5183 5' -59.3 NC_001798.1 + 56510 0.74 0.331636
Target:  5'- cGGCAGGGUggaGCGGaUCGuGGCGGuGCCg -3'
miRNA:   3'- uUUGUCCCA---CGCC-AGC-CCGCCuUGGa -5'
5183 5' -59.3 NC_001798.1 + 146294 0.74 0.324316
Target:  5'- cGAGCGGGGaguggGCGGcCGGGCGGGAg-- -3'
miRNA:   3'- -UUUGUCCCa----CGCCaGCCCGCCUUgga -5'
5183 5' -59.3 NC_001798.1 + 36556 0.75 0.296245
Target:  5'- cGGGCGGGGgcgcgcgGCGGcCGGGCGGGGgCg -3'
miRNA:   3'- -UUUGUCCCa------CGCCaGCCCGCCUUgGa -5'
5183 5' -59.3 NC_001798.1 + 36514 0.75 0.296245
Target:  5'- cGGGCGGGGgcgcgcgGCGGcCGGGCGGGGgCg -3'
miRNA:   3'- -UUUGUCCCa------CGCCaGCCCGCCUUgGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.