Results 61 - 68 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 5183 | 5' | -59.3 | NC_001798.1 | + | 36598 | 0.75 | 0.296245 |
|
Target: 5'- cGGGCGGGGgcgcgcgGCGGcCGGGCGGGGgCg -3' miRNA: 3'- -UUUGUCCCa------CGCCaGCCCGCCUUgGa -5' |
|||||||
| 5183 | 5' | -59.3 | NC_001798.1 | + | 27336 | 0.75 | 0.295568 |
|
Target: 5'- uGGCGGGGaaccgugUGCGGgCGGGCGGGugCUu -3' miRNA: 3'- uUUGUCCC-------ACGCCaGCCCGCCUugGA- -5' |
|||||||
| 5183 | 5' | -59.3 | NC_001798.1 | + | 22356 | 0.75 | 0.289529 |
|
Target: 5'- gGGGCGGGGccgcgcauaaUGCGGUUccaccuggGGGCGGAACCc -3' miRNA: 3'- -UUUGUCCC----------ACGCCAG--------CCCGCCUUGGa -5' |
|||||||
| 5183 | 5' | -59.3 | NC_001798.1 | + | 57525 | 0.75 | 0.282933 |
|
Target: 5'- gGGGCGuGGGUGUGGUUcgggGGGCGGAugCg -3' miRNA: 3'- -UUUGU-CCCACGCCAG----CCCGCCUugGa -5' |
|||||||
| 5183 | 5' | -59.3 | NC_001798.1 | + | 149451 | 0.75 | 0.270099 |
|
Target: 5'- gGAGCAGGGUGCGG-CGGcuccacGCgGGGGCCg -3' miRNA: 3'- -UUUGUCCCACGCCaGCC------CG-CCUUGGa -5' |
|||||||
| 5183 | 5' | -59.3 | NC_001798.1 | + | 11175 | 0.76 | 0.245843 |
|
Target: 5'- cGAUGGGG-GCGGUgGGGCGG-GCCUg -3' miRNA: 3'- uUUGUCCCaCGCCAgCCCGCCuUGGA- -5' |
|||||||
| 5183 | 5' | -59.3 | NC_001798.1 | + | 85821 | 0.77 | 0.223422 |
|
Target: 5'- uGACGGGGggggGCGGgggCGGGCGGGGgCUc -3' miRNA: 3'- uUUGUCCCa---CGCCa--GCCCGCCUUgGA- -5' |
|||||||
| 5183 | 5' | -59.3 | NC_001798.1 | + | 103177 | 1.04 | 0.002744 |
|
Target: 5'- cAAACAGGGUGCGGUCGGGCGGAACCUc -3' miRNA: 3'- -UUUGUCCCACGCCAGCCCGCCUUGGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home