miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5183 5' -59.3 NC_001798.1 + 56982 0.67 0.690669
Target:  5'- cGugGGGGUGgaUGGUCagcgacggaGGGCGGAACa- -3'
miRNA:   3'- uUugUCCCAC--GCCAG---------CCCGCCUUGga -5'
5183 5' -59.3 NC_001798.1 + 51472 0.67 0.690669
Target:  5'- -cGCGGGccGCGuGUCGGGCccGGAGCUg -3'
miRNA:   3'- uuUGUCCcaCGC-CAGCCCG--CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 121777 0.67 0.680699
Target:  5'- --cCAGGcGUccuCGGucUCGGGCGGGGCCg -3'
miRNA:   3'- uuuGUCC-CAc--GCC--AGCCCGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 151171 0.67 0.670691
Target:  5'- -cACGGGGggGUGGgcgacaGGGCGcGGACCg -3'
miRNA:   3'- uuUGUCCCa-CGCCag----CCCGC-CUUGGa -5'
5183 5' -59.3 NC_001798.1 + 67 0.67 0.670691
Target:  5'- aAGGCGGGcGgcgGCGG-CGGGCGGGcggcagggcaGCCc -3'
miRNA:   3'- -UUUGUCC-Ca--CGCCaGCCCGCCU----------UGGa -5'
5183 5' -59.3 NC_001798.1 + 154405 0.67 0.670691
Target:  5'- aAGGCGGGcGgcgGCGG-CGGGCGGGcggcagggcaGCCc -3'
miRNA:   3'- -UUUGUCC-Ca--CGCCaGCCCGCCU----------UGGa -5'
5183 5' -59.3 NC_001798.1 + 26952 0.68 0.6385
Target:  5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGc--- -3'
miRNA:   3'- -UUUGUCCCa-----------CgCCAGCCCGCCUugga -5'
5183 5' -59.3 NC_001798.1 + 26863 0.68 0.6385
Target:  5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGc--- -3'
miRNA:   3'- -UUUGUCCCa-----------CgCCAGCCCGCCUugga -5'
5183 5' -59.3 NC_001798.1 + 26818 0.68 0.6385
Target:  5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGc--- -3'
miRNA:   3'- -UUUGUCCCa-----------CgCCAGCCCGCCUugga -5'
5183 5' -59.3 NC_001798.1 + 74349 0.68 0.630434
Target:  5'- --cCAaGGUGCGGU-GGGCGGGcGCCa -3'
miRNA:   3'- uuuGUcCCACGCCAgCCCGCCU-UGGa -5'
5183 5' -59.3 NC_001798.1 + 27230 0.68 0.620354
Target:  5'- -cGCGGGGgagGCGGccgCGGgggaggcggccGCGGGACCg -3'
miRNA:   3'- uuUGUCCCa--CGCCa--GCC-----------CGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 66765 0.68 0.620354
Target:  5'- ---uGGGGUGCGG-CGGcgugggccGCGGAAUCg -3'
miRNA:   3'- uuugUCCCACGCCaGCC--------CGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 153806 0.68 0.610282
Target:  5'- cGGCGGGGggcagGCGG-CGGcaggcgcggcguGCGGGGCCUc -3'
miRNA:   3'- uUUGUCCCa----CGCCaGCC------------CGCCUUGGA- -5'
5183 5' -59.3 NC_001798.1 + 102485 0.69 0.590193
Target:  5'- gAGGCGGGuaGUGCGGggaCGGGCcGGcGCCg -3'
miRNA:   3'- -UUUGUCC--CACGCCa--GCCCG-CCuUGGa -5'
5183 5' -59.3 NC_001798.1 + 36082 0.69 0.587188
Target:  5'- -cGCGGGGUaggugggugggcggGUGGUgGGGgGGGGCCc -3'
miRNA:   3'- uuUGUCCCA--------------CGCCAgCCCgCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 41465 0.69 0.58019
Target:  5'- --cCGGGGgggGCGGUC-GGCGGGcCCa -3'
miRNA:   3'- uuuGUCCCa--CGCCAGcCCGCCUuGGa -5'
5183 5' -59.3 NC_001798.1 + 119512 0.69 0.570222
Target:  5'- gAGGCGGGGgcagGCGuGUUGGGaaGGGACCc -3'
miRNA:   3'- -UUUGUCCCa---CGC-CAGCCCg-CCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 27012 0.69 0.562279
Target:  5'- cGGGCGGGGgucgggcgggcgGgGGUCGGGCGGGcggcacgucucccgcGCCc -3'
miRNA:   3'- -UUUGUCCCa-----------CgCCAGCCCGCCU---------------UGGa -5'
5183 5' -59.3 NC_001798.1 + 57450 0.69 0.550421
Target:  5'- --uCGGGGgccCGGUCuugggGGGCGGGGCCg -3'
miRNA:   3'- uuuGUCCCac-GCCAG-----CCCGCCUUGGa -5'
5183 5' -59.3 NC_001798.1 + 148291 0.7 0.540599
Target:  5'- cGGGCAGGuGUGCGGgcgGGGUGGggUg- -3'
miRNA:   3'- -UUUGUCC-CACGCCag-CCCGCCuuGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.