miRNA display CGI


Results 41 - 60 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 3' -48.7 NC_001798.1 + 133451 0.66 0.999149
Target:  5'- aGGAcGCGGuuaagcgcguGGCCGAcgcccuGAgcGGCUGCCCc -3'
miRNA:   3'- -CCUuCGCCuu--------UUGGUU------UU--UCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 134156 0.66 0.999149
Target:  5'- cGGccccCGGG--GCCGucgcGGCCGCCCg -3'
miRNA:   3'- -CCuuc-GCCUuuUGGUuuu-UCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 31804 0.66 0.999149
Target:  5'- cGGgcGCGGAGggagGACCc-GGGGUCcCCCg -3'
miRNA:   3'- -CCuuCGCCUU----UUGGuuUUUCGGcGGG- -5'
5188 3' -48.7 NC_001798.1 + 59784 0.66 0.999149
Target:  5'- gGGAAcGCGGGcgguACCc--GGGCCugGCCCu -3'
miRNA:   3'- -CCUU-CGCCUuu--UGGuuuUUCGG--CGGG- -5'
5188 3' -48.7 NC_001798.1 + 137411 0.66 0.999149
Target:  5'- cGGGAuCGGGuccggguccgGGACCGGGAc-CCGCCCc -3'
miRNA:   3'- -CCUUcGCCU----------UUUGGUUUUucGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 150200 0.66 0.999132
Target:  5'- gGGggGCGGc--ACCGGGGGuguugguGCCGCg- -3'
miRNA:   3'- -CCuuCGCCuuuUGGUUUUU-------CGGCGgg -5'
5188 3' -48.7 NC_001798.1 + 141085 0.66 0.999096
Target:  5'- gGGGAGCugacGGcAGAacuccugucgcuacGCCGGGAcGCCGCCg -3'
miRNA:   3'- -CCUUCG----CC-UUU--------------UGGUUUUuCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 58707 0.66 0.999058
Target:  5'- cGgcGCGGggGucgauccACCAGuagcgcgcacuGCCGCCUa -3'
miRNA:   3'- cCuuCGCCuuU-------UGGUUuuu--------CGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 7142 0.66 0.999039
Target:  5'- aGGAGCGGAcacgcuugAagggcacucgcuuccGACCGAcgGGCC-CCCg -3'
miRNA:   3'- cCUUCGCCU--------U---------------UUGGUUuuUCGGcGGG- -5'
5188 3' -48.7 NC_001798.1 + 4347 0.66 0.998958
Target:  5'- aGAGGCGGccgagcGCCGgcgGGGGGCgCGCCg -3'
miRNA:   3'- cCUUCGCCuuu---UGGU---UUUUCG-GCGGg -5'
5188 3' -48.7 NC_001798.1 + 34725 0.66 0.998958
Target:  5'- gGGAAGgGGcGAGggucgggcCCGGGAgcggGGCgGCCCg -3'
miRNA:   3'- -CCUUCgCCuUUU--------GGUUUU----UCGgCGGG- -5'
5188 3' -48.7 NC_001798.1 + 47225 0.66 0.998958
Target:  5'- gGGAAGgGGugGGCguGucguuGGGCgGCCCc -3'
miRNA:   3'- -CCUUCgCCuuUUGguUu----UUCGgCGGG- -5'
5188 3' -48.7 NC_001798.1 + 59350 0.66 0.998958
Target:  5'- gGGggGUGGAAagGACgGAGgcGCaaCCCg -3'
miRNA:   3'- -CCuuCGCCUU--UUGgUUUuuCGgcGGG- -5'
5188 3' -48.7 NC_001798.1 + 90117 0.66 0.998958
Target:  5'- uGAGGUGGGAcuCgGGGAGGUCGCa- -3'
miRNA:   3'- cCUUCGCCUUuuGgUUUUUCGGCGgg -5'
5188 3' -48.7 NC_001798.1 + 100294 0.66 0.998958
Target:  5'- cGGccGgGGAcguGCUAc--AGCCGCCCc -3'
miRNA:   3'- -CCuuCgCCUuu-UGGUuuuUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 151626 0.66 0.998958
Target:  5'- cGGggGCGuGGccgcguCCAucAGGCcCGCCUc -3'
miRNA:   3'- -CCuuCGC-CUuuu---GGUuuUUCG-GCGGG- -5'
5188 3' -48.7 NC_001798.1 + 3210 0.66 0.998958
Target:  5'- cGGAGGCGGGcgcGGCgCuc--AGgCGCCCc -3'
miRNA:   3'- -CCUUCGCCUu--UUG-GuuuuUCgGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 91090 0.66 0.998958
Target:  5'- cGGAGGCGGccgucguGGACCccggugcGCUGCuCCg -3'
miRNA:   3'- -CCUUCGCCu------UUUGGuuuuu--CGGCG-GG- -5'
5188 3' -48.7 NC_001798.1 + 120685 0.66 0.998958
Target:  5'- aGGAGuCGGGcagAAACaGAucGGCCGUCCg -3'
miRNA:   3'- cCUUC-GCCU---UUUGgUUuuUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 134402 0.66 0.998958
Target:  5'- uGGAcGUGG-AGGCCAAGGucgacGUCGaCCCg -3'
miRNA:   3'- -CCUuCGCCuUUUGGUUUUu----CGGC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.