miRNA display CGI


Results 21 - 40 of 468 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 3' -48.7 NC_001798.1 + 34317 0.66 0.999443
Target:  5'- cGGGcgguGCGGcuGACCu----GCCuGCCCu -3'
miRNA:   3'- -CCUu---CGCCuuUUGGuuuuuCGG-CGGG- -5'
5188 3' -48.7 NC_001798.1 + 149789 0.66 0.999431
Target:  5'- cGGAcGCGGAcgcGAcgcucccACCAGcc--CCGCCCg -3'
miRNA:   3'- -CCUuCGCCU---UU-------UGGUUuuucGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 118016 0.66 0.999366
Target:  5'- ---cGUGGAAGACCcgugcggccuguuucAGGAAGCCuaCCCg -3'
miRNA:   3'- ccuuCGCCUUUUGG---------------UUUUUCGGc-GGG- -5'
5188 3' -48.7 NC_001798.1 + 32359 0.66 0.99931
Target:  5'- ---cGCGGAGGGCgGccccGAGCCcgggGCCCg -3'
miRNA:   3'- ccuuCGCCUUUUGgUuu--UUCGG----CGGG- -5'
5188 3' -48.7 NC_001798.1 + 39763 0.66 0.99931
Target:  5'- cGGuucccGGgGGGAAGCCGA----CCGCCUg -3'
miRNA:   3'- -CCu----UCgCCUUUUGGUUuuucGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 124081 0.66 0.99931
Target:  5'- aGGAGGCGGc--GCCugc--GCCccgacgGCCCa -3'
miRNA:   3'- -CCUUCGCCuuuUGGuuuuuCGG------CGGG- -5'
5188 3' -48.7 NC_001798.1 + 152297 0.66 0.99931
Target:  5'- cGGGGuaGGGuAGACuCGAGAcGGCgGCCCg -3'
miRNA:   3'- -CCUUcgCCU-UUUG-GUUUU-UCGgCGGG- -5'
5188 3' -48.7 NC_001798.1 + 6243 0.66 0.99931
Target:  5'- gGGAcgGGCGGggGACgGGGggacGGGCCGg-- -3'
miRNA:   3'- -CCU--UCGCCuuUUGgUUU----UUCGGCggg -5'
5188 3' -48.7 NC_001798.1 + 6612 0.66 0.99931
Target:  5'- gGGggGaCGGggGgacggGCCGGGGGGacgggGCCCc -3'
miRNA:   3'- -CCuuC-GCCuuU-----UGGUUUUUCgg---CGGG- -5'
5188 3' -48.7 NC_001798.1 + 75560 0.66 0.99931
Target:  5'- --uGGCGGA----CGu--GGCCGCCCa -3'
miRNA:   3'- ccuUCGCCUuuugGUuuuUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 88097 0.66 0.99931
Target:  5'- ---cGCGGAGGGCgGcc-AGCCGCgCg -3'
miRNA:   3'- ccuuCGCCUUUUGgUuuuUCGGCGgG- -5'
5188 3' -48.7 NC_001798.1 + 60881 0.66 0.999295
Target:  5'- gGGggGCGGcgGccgcaccGCCGGGAAGaugaGCCa -3'
miRNA:   3'- -CCuuCGCCuuU-------UGGUUUUUCgg--CGGg -5'
5188 3' -48.7 NC_001798.1 + 144383 0.66 0.999201
Target:  5'- cGGAaaacaucacgcccGGCGGAcAGCCucuAGGgcgacgacgcuggacAGCCGaCCCg -3'
miRNA:   3'- -CCU-------------UCGCCUuUUGGu--UUU---------------UCGGC-GGG- -5'
5188 3' -48.7 NC_001798.1 + 97676 0.66 0.999149
Target:  5'- ---cGCGGAccgccuGACCAAGcGGUCGCUg -3'
miRNA:   3'- ccuuCGCCUu-----UUGGUUUuUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 132498 0.66 0.999149
Target:  5'- uGggGCGGGuacGGACUcuccgcaagGGGGAGCUGCUg -3'
miRNA:   3'- cCuuCGCCU---UUUGG---------UUUUUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 133451 0.66 0.999149
Target:  5'- aGGAcGCGGuuaagcgcguGGCCGAcgcccuGAgcGGCUGCCCc -3'
miRNA:   3'- -CCUuCGCCuu--------UUGGUU------UU--UCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 134156 0.66 0.999149
Target:  5'- cGGccccCGGG--GCCGucgcGGCCGCCCg -3'
miRNA:   3'- -CCuuc-GCCUuuUGGUuuu-UCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 31804 0.66 0.999149
Target:  5'- cGGgcGCGGAGggagGACCc-GGGGUCcCCCg -3'
miRNA:   3'- -CCuuCGCCUU----UUGGuuUUUCGGcGGG- -5'
5188 3' -48.7 NC_001798.1 + 59784 0.66 0.999149
Target:  5'- gGGAAcGCGGGcgguACCc--GGGCCugGCCCu -3'
miRNA:   3'- -CCUU-CGCCUuu--UGGuuuUUCGG--CGGG- -5'
5188 3' -48.7 NC_001798.1 + 86082 0.66 0.999149
Target:  5'- uGGGAGuCGGGGccCCGGcugcgcGCCGCCg -3'
miRNA:   3'- -CCUUC-GCCUUuuGGUUuuu---CGGCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.