miRNA display CGI


Results 21 - 40 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 3' -48.7 NC_001798.1 + 22250 0.79 0.68777
Target:  5'- cGGAAGCGGA---------AGCCGCCCg -3'
miRNA:   3'- -CCUUCGCCUuuugguuuuUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 106754 0.79 0.68777
Target:  5'- cGGAGcccGCGGGGAuCCG--GAGCUGCCCa -3'
miRNA:   3'- -CCUU---CGCCUUUuGGUuuUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 44854 0.79 0.68777
Target:  5'- gGGuGGgGGAAAGCCGGcgcAGAGCCGCgCg -3'
miRNA:   3'- -CCuUCgCCUUUUGGUU---UUUCGGCGgG- -5'
5188 3' -48.7 NC_001798.1 + 74864 0.79 0.68777
Target:  5'- uGGAGGUGGggGcaguGCCGGugGGUCGCCa -3'
miRNA:   3'- -CCUUCGCCuuU----UGGUUuuUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 54189 0.79 0.691996
Target:  5'- cGGcGGUGGAcAGCCAGGAGcgcuucugcaggaccGCCGCCCc -3'
miRNA:   3'- -CCuUCGCCUuUUGGUUUUU---------------CGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 16136 0.79 0.70252
Target:  5'- uGGggGCGGAAuaccauACCGGGggcaccgagcgccacGGGCgGCCCg -3'
miRNA:   3'- -CCuuCGCCUUu-----UGGUUU---------------UUCGgCGGG- -5'
5188 3' -48.7 NC_001798.1 + 24582 0.78 0.706713
Target:  5'- cGGAGGCGGGccgcguGGCCGuggagugccuGGCCGCCUg -3'
miRNA:   3'- -CCUUCGCCUu-----UUGGUuuu-------UCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 31977 0.78 0.708805
Target:  5'- aGGggGUGGggG-CCAAGAGggcggcGCCGCgCCg -3'
miRNA:   3'- -CCuuCGCCuuUuGGUUUUU------CGGCG-GG- -5'
5188 3' -48.7 NC_001798.1 + 3892 0.78 0.71922
Target:  5'- cGGggGCGGggGGCCGGccccGGGCCacgGCUCc -3'
miRNA:   3'- -CCuuCGCCuuUUGGUUu---UUCGG---CGGG- -5'
5188 3' -48.7 NC_001798.1 + 9091 0.78 0.723365
Target:  5'- cGgcGUGGAGGGCCAcgggaaaggccgcggGGGAGCCGCCg -3'
miRNA:   3'- cCuuCGCCUUUUGGU---------------UUUUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 85934 0.78 0.729555
Target:  5'- cGGggGCGGAGAcagcugcugcACgCGcGccGCCGCCCg -3'
miRNA:   3'- -CCuuCGCCUUU----------UG-GUuUuuCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 96989 0.78 0.739797
Target:  5'- gGGcGGCGGGgccaGGGCCGGcccGCCGCCCg -3'
miRNA:   3'- -CCuUCGCCU----UUUGGUUuuuCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 152185 0.78 0.739797
Target:  5'- gGGggGCcuGAGACCcGGGGGUCGCCCu -3'
miRNA:   3'- -CCuuCGccUUUUGGuUUUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 91358 0.78 0.739797
Target:  5'- ---cGgGGGAAGCCG---GGCCGCCCg -3'
miRNA:   3'- ccuuCgCCUUUUGGUuuuUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 16232 0.78 0.749936
Target:  5'- gGGggGCGGuGGGGCCGGGGcccuccCCGCCCa -3'
miRNA:   3'- -CCuuCGCC-UUUUGGUUUUuc----GGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 138888 0.78 0.749936
Target:  5'- gGGAAGCuGGucgguCCGcuuGGGCCGCCCg -3'
miRNA:   3'- -CCUUCG-CCuuuu-GGUuu-UUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 142950 0.78 0.749936
Target:  5'- ---cGgGGAcgGCCGGgcAGAGCCGCCCa -3'
miRNA:   3'- ccuuCgCCUuuUGGUU--UUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 152811 0.77 0.758965
Target:  5'- gGGAGuaauuacGCGGGGAG-CGAGGGGCCGUCCg -3'
miRNA:   3'- -CCUU-------CGCCUUUUgGUUUUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 48673 0.77 0.759963
Target:  5'- cGAGcGCGGggGAC----GGGCCGCCCg -3'
miRNA:   3'- cCUU-CGCCuuUUGguuuUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 4118 0.77 0.759963
Target:  5'- -uGGGCGGGcucGGCCGGGgcGCCGCCCc -3'
miRNA:   3'- ccUUCGCCUu--UUGGUUUuuCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.