miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 3' -48.7 NC_001798.1 + 98715 1.17 0.005034
Target:  5'- cGGAAGCGGAAAACCAAAAAGCCGCCCa -3'
miRNA:   3'- -CCUUCGCCUUUUGGUUUUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 33183 0.89 0.231986
Target:  5'- gGGggGCGGGca--CGAGAAGCCGCCCc -3'
miRNA:   3'- -CCuuCGCCUuuugGUUUUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 122079 0.88 0.263083
Target:  5'- cGGAGGCGGugcuggcGGGCCu-GGAGCCGCCCg -3'
miRNA:   3'- -CCUUCGCCu------UUUGGuuUUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 125721 0.86 0.335271
Target:  5'- cGGggGCGGcgagauGAGCCGAGAcGCCGCCa -3'
miRNA:   3'- -CCuuCGCCu-----UUUGGUUUUuCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 117506 0.86 0.343237
Target:  5'- cGGucguGGCGGGAAACCGGcuGGGGCCgGCCCa -3'
miRNA:   3'- -CCu---UCGCCUUUUGGUU--UUUCGG-CGGG- -5'
5188 3' -48.7 NC_001798.1 + 64085 0.85 0.385083
Target:  5'- cGGggGUGGGGcacACCGGAAucggGGCCGCCCc -3'
miRNA:   3'- -CCuuCGCCUUu--UGGUUUU----UCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 85288 0.82 0.518462
Target:  5'- gGGggGCGGggG-CCG--GGGuCCGCCCg -3'
miRNA:   3'- -CCuuCGCCuuUuGGUuuUUC-GGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 51093 0.81 0.570531
Target:  5'- aGGccGCGGGGgagauggcGAgCGAAGAGCCGCCCc -3'
miRNA:   3'- -CCuuCGCCUU--------UUgGUUUUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 22303 0.8 0.613075
Target:  5'- cGGcGGCGGcgcGACCAAcgGGCCGCCg -3'
miRNA:   3'- -CCuUCGCCuu-UUGGUUuuUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 6376 0.8 0.634474
Target:  5'- gGGggGcCGGggGGCCGGGGGGCCgggggGCCg -3'
miRNA:   3'- -CCuuC-GCCuuUUGGUUUUUCGG-----CGGg -5'
5188 3' -48.7 NC_001798.1 + 660 0.8 0.634474
Target:  5'- cGGgcGCGGGAGACgu----GCCGCCCg -3'
miRNA:   3'- -CCuuCGCCUUUUGguuuuuCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 43476 0.8 0.634474
Target:  5'- cGGggGCGG---GCguGAGGGCCGCCg -3'
miRNA:   3'- -CCuuCGCCuuuUGguUUUUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 29380 0.8 0.634474
Target:  5'- cGGggGCGGGc-ACCAcucAGGGCCGCgCCg -3'
miRNA:   3'- -CCuuCGCCUuuUGGUu--UUUCGGCG-GG- -5'
5188 3' -48.7 NC_001798.1 + 67713 0.8 0.645175
Target:  5'- gGGAGGCGGGGugggcgguacGACCGAAAGGaCGCaCCg -3'
miRNA:   3'- -CCUUCGCCUU----------UUGGUUUUUCgGCG-GG- -5'
5188 3' -48.7 NC_001798.1 + 153241 0.8 0.645175
Target:  5'- cGGcGGCGGAGGACCcgcgcGCCGCCg -3'
miRNA:   3'- -CCuUCGCCUUUUGGuuuuuCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 6800 0.8 0.645175
Target:  5'- gGGAAcgGGAGGACCGAGAGGCgGCCa -3'
miRNA:   3'- -CCUUcgCCUUUUGGUUUUUCGgCGGg -5'
5188 3' -48.7 NC_001798.1 + 101021 0.79 0.654797
Target:  5'- gGGggGCGGGuuugacgAGGCCAAGuuGGCCgagGCCCg -3'
miRNA:   3'- -CCuuCGCCU-------UUUGGUUUu-UCGG---CGGG- -5'
5188 3' -48.7 NC_001798.1 + 29932 0.79 0.666534
Target:  5'- cGGggGCGGGAcGCUugacGGGGCCGaCCCc -3'
miRNA:   3'- -CCuuCGCCUUuUGGuu--UUUCGGC-GGG- -5'
5188 3' -48.7 NC_001798.1 + 68567 0.79 0.666534
Target:  5'- cGGAGGCGcccGAAcAGCCGcucGAGGGCCGCCUc -3'
miRNA:   3'- -CCUUCGC---CUU-UUGGU---UUUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 111841 0.79 0.677172
Target:  5'- cGggGCGGGAAuGCCGucaaacAGGCCGCUCa -3'
miRNA:   3'- cCuuCGCCUUU-UGGUuu----UUCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.