miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 3' -48.7 NC_001798.1 + 660 0.8 0.634474
Target:  5'- cGGgcGCGGGAGACgu----GCCGCCCg -3'
miRNA:   3'- -CCuuCGCCUUUUGguuuuuCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 1290 0.66 0.998732
Target:  5'- cGGggGCGcGucGCCGucGGGCucgagcagCGCCCg -3'
miRNA:   3'- -CCuuCGCcUuuUGGUuuUUCG--------GCGGG- -5'
5188 3' -48.7 NC_001798.1 + 1509 0.72 0.947835
Target:  5'- cGAGGCGGc-GGCCc---GGCCGUCCa -3'
miRNA:   3'- cCUUCGCCuuUUGGuuuuUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 1988 0.71 0.96377
Target:  5'- cGGggGCGcGGu--CCAGuuGcCCGCCCa -3'
miRNA:   3'- -CCuuCGC-CUuuuGGUUuuUcGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 2017 0.72 0.960153
Target:  5'- cGGccguGGCGGGcccgcaGAGCCGGuugcccAGGGCCGCCa -3'
miRNA:   3'- -CCu---UCGCCU------UUUGGUU------UUUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 2065 0.68 0.995236
Target:  5'- aGGAcagcccgccgcgcucGGCGGAccacuCCGGGGGGggcCCGCCCc -3'
miRNA:   3'- -CCU---------------UCGCCUuuu--GGUUUUUC---GGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 2267 0.72 0.955896
Target:  5'- gGGggGCGGGGcggcgcagcgcgcGGCCAGcGAGGCCaGCgCg -3'
miRNA:   3'- -CCuuCGCCUU-------------UUGGUU-UUUCGG-CGgG- -5'
5188 3' -48.7 NC_001798.1 + 2434 0.7 0.986581
Target:  5'- uGGGccccGGCGGcuGGCgGcgccAGCCGCCCu -3'
miRNA:   3'- -CCU----UCGCCuuUUGgUuuu-UCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 2537 0.69 0.989635
Target:  5'- cGggGCGGggGGCgCGgcccccgcgggAGGGGCgGCCg -3'
miRNA:   3'- cCuuCGCCuuUUG-GU-----------UUUUCGgCGGg -5'
5188 3' -48.7 NC_001798.1 + 2605 0.7 0.978451
Target:  5'- ----uCGGggGGCgCGGGgcGCCGCCCg -3'
miRNA:   3'- ccuucGCCuuUUG-GUUUuuCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 2680 0.73 0.92784
Target:  5'- cGGAGGCGGGcgcggcGAGCgAGucGGCCGCg- -3'
miRNA:   3'- -CCUUCGCCU------UUUGgUUuuUCGGCGgg -5'
5188 3' -48.7 NC_001798.1 + 3015 0.74 0.903677
Target:  5'- gGGgcGCGGcgGGCCGGGcuccGGCCaGCCCc -3'
miRNA:   3'- -CCuuCGCCuuUUGGUUUu---UCGG-CGGG- -5'
5188 3' -48.7 NC_001798.1 + 3210 0.66 0.998958
Target:  5'- cGGAGGCGGGcgcGGCgCuc--AGgCGCCCc -3'
miRNA:   3'- -CCUUCGCCUu--UUG-GuuuuUCgGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 3485 0.66 0.998732
Target:  5'- cGGucguAGCGGcggcucauGGCCAcggcGGCCGCCa -3'
miRNA:   3'- -CCu---UCGCCuu------UUGGUuuu-UCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 3892 0.78 0.71922
Target:  5'- cGGggGCGGggGGCCGGccccGGGCCacgGCUCc -3'
miRNA:   3'- -CCuuCGCCuuUUGGUUu---UUCGG---CGGG- -5'
5188 3' -48.7 NC_001798.1 + 3966 0.7 0.984815
Target:  5'- cGGAGGCcgcgucGGcgu-CCAGcucgaccgccGGGGCCGCCCg -3'
miRNA:   3'- -CCUUCG------CCuuuuGGUU----------UUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 4051 0.66 0.998732
Target:  5'- cGGGcccGGCGGcgcuCCA---GGCgGCCCg -3'
miRNA:   3'- -CCU---UCGCCuuuuGGUuuuUCGgCGGG- -5'
5188 3' -48.7 NC_001798.1 + 4118 0.77 0.759963
Target:  5'- -uGGGCGGGcucGGCCGGGgcGCCGCCCc -3'
miRNA:   3'- ccUUCGCCUu--UUGGUUUuuCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 4289 0.68 0.993168
Target:  5'- aGGAGGCGGAGGA---GGAGGCggaggaCGCCg -3'
miRNA:   3'- -CCUUCGCCUUUUgguUUUUCG------GCGGg -5'
5188 3' -48.7 NC_001798.1 + 4347 0.66 0.998958
Target:  5'- aGAGGCGGccgagcGCCGgcgGGGGGCgCGCCg -3'
miRNA:   3'- cCUUCGCCuuu---UGGU---UUUUCG-GCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.