miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 3' -48.7 NC_001798.1 + 154315 0.68 0.993168
Target:  5'- aGGGgcGGCGGcAGGACgGGGAcucCCGCCCc -3'
miRNA:   3'- -CCU--UCGCC-UUUUGgUUUUuc-GGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 153762 0.67 0.998345
Target:  5'- uGggGCGGAAGGgggcgcuGCgGCCCg -3'
miRNA:   3'- cCuuCGCCUUUUgguuuuuCGgCGGG- -5'
5188 3' -48.7 NC_001798.1 + 153680 0.67 0.997361
Target:  5'- -cGGGCGGGGAcGCgG--GGGCCGCCg -3'
miRNA:   3'- ccUUCGCCUUU-UGgUuuUUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 153399 0.68 0.994932
Target:  5'- cGGucGCGGucGGCCcgcucGCgCGCCCa -3'
miRNA:   3'- -CCuuCGCCuuUUGGuuuuuCG-GCGGG- -5'
5188 3' -48.7 NC_001798.1 + 153241 0.8 0.645175
Target:  5'- cGGcGGCGGAGGACCcgcgcGCCGCCg -3'
miRNA:   3'- -CCuUCGCCUUUUGGuuuuuCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 153167 0.75 0.875439
Target:  5'- cGGAGCuccGGGGcuccGCCGGccGAGGCCGCCCu -3'
miRNA:   3'- cCUUCG---CCUUu---UGGUU--UUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 153072 0.67 0.996871
Target:  5'- uGggGCGGGcgGAGCgGcgGGGCgGCgCCg -3'
miRNA:   3'- cCuuCGCCU--UUUGgUuuUUCGgCG-GG- -5'
5188 3' -48.7 NC_001798.1 + 153044 0.73 0.933229
Target:  5'- cGGcgcGCGGuuGGCCGGc--GCCGCCCc -3'
miRNA:   3'- -CCuu-CGCCuuUUGGUUuuuCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 153007 0.68 0.994103
Target:  5'- cGggGCGGuc-GCCGGggcGGAGUCcggGCCCg -3'
miRNA:   3'- cCuuCGCCuuuUGGUU---UUUCGG---CGGG- -5'
5188 3' -48.7 NC_001798.1 + 152862 0.68 0.994103
Target:  5'- -uAAGCGGGAAuggcgGCCcguuAAAAGCUGCUa -3'
miRNA:   3'- ccUUCGCCUUU-----UGGu---UUUUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 152811 0.77 0.758965
Target:  5'- gGGAGuaauuacGCGGGGAG-CGAGGGGCCGUCCg -3'
miRNA:   3'- -CCUU-------CGCCUUUUgGUUUUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 152705 0.77 0.789256
Target:  5'- aGGAAGCccaGggGACCAAuaGGGGCCgaucaGCCCa -3'
miRNA:   3'- -CCUUCGc--CuuUUGGUU--UUUCGG-----CGGG- -5'
5188 3' -48.7 NC_001798.1 + 152521 0.73 0.926173
Target:  5'- cGGggGCGGAGGGagGGAAucccccccucucggGGCgGCCCc -3'
miRNA:   3'- -CCuuCGCCUUUUggUUUU--------------UCGgCGGG- -5'
5188 3' -48.7 NC_001798.1 + 152297 0.66 0.99931
Target:  5'- cGGGGuaGGGuAGACuCGAGAcGGCgGCCCg -3'
miRNA:   3'- -CCUUcgCCU-UUUG-GUUUU-UCGgCGGG- -5'
5188 3' -48.7 NC_001798.1 + 152236 0.67 0.998464
Target:  5'- --cGGCGGccgcucGGGGCCG--GGGuCCGCCCg -3'
miRNA:   3'- ccuUCGCC------UUUUGGUuuUUC-GGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 152185 0.78 0.739797
Target:  5'- gGGggGCcuGAGACCcGGGGGUCGCCCu -3'
miRNA:   3'- -CCuuCGccUUUUGGuUUUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 151923 0.66 0.998732
Target:  5'- cGGAAGgGGggGAgaAAGGGGuCCGUaaCCa -3'
miRNA:   3'- -CCUUCgCCuuUUggUUUUUC-GGCG--GG- -5'
5188 3' -48.7 NC_001798.1 + 151688 0.68 0.994932
Target:  5'- cGGAGGUGGGucGCgguGAAGGUCGUCg -3'
miRNA:   3'- -CCUUCGCCUuuUGgu-UUUUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 151626 0.66 0.998958
Target:  5'- cGGggGCGuGGccgcguCCAucAGGCcCGCCUc -3'
miRNA:   3'- -CCuuCGC-CUuuu---GGUuuUUCG-GCGGG- -5'
5188 3' -48.7 NC_001798.1 + 151219 0.75 0.859873
Target:  5'- aGGGAGCGcGGGGCCGuccgcGGGuuGCCCg -3'
miRNA:   3'- -CCUUCGCcUUUUGGUuu---UUCggCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.