miRNA display CGI


Results 21 - 40 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 3' -48.7 NC_001798.1 + 4574 0.69 0.989635
Target:  5'- uGGAggggguccgcGGCGGAGAagGCgAGcgGGCCGCUUc -3'
miRNA:   3'- -CCU----------UCGCCUUU--UGgUUuuUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 4893 0.71 0.970302
Target:  5'- uGGAucCGGAGAuCCG--GGGCCGCCg -3'
miRNA:   3'- -CCUucGCCUUUuGGUuuUUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 5278 0.69 0.990943
Target:  5'- aGGAcGCGGAggagGAGCgAucGAcGCCGCCg -3'
miRNA:   3'- -CCUuCGCCU----UUUGgUuuUU-CGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 5926 0.68 0.994447
Target:  5'- gGGggGCGG---GCCGuuccucgcgcacauaAAGGGCCGgcguCCCg -3'
miRNA:   3'- -CCuuCGCCuuuUGGU---------------UUUUCGGC----GGG- -5'
5188 3' -48.7 NC_001798.1 + 6243 0.66 0.99931
Target:  5'- gGGAcgGGCGGggGACgGGGggacGGGCCGg-- -3'
miRNA:   3'- -CCU--UCGCCuuUUGgUUU----UUCGGCggg -5'
5188 3' -48.7 NC_001798.1 + 6376 0.8 0.634474
Target:  5'- gGGggGcCGGggGGCCGGGGGGCCgggggGCCg -3'
miRNA:   3'- -CCuuC-GCCuuUUGGUUUUUCGG-----CGGg -5'
5188 3' -48.7 NC_001798.1 + 6612 0.66 0.99931
Target:  5'- gGGggGaCGGggGgacggGCCGGGGGGacgggGCCCc -3'
miRNA:   3'- -CCuuC-GCCuuU-----UGGUUUUUCgg---CGGG- -5'
5188 3' -48.7 NC_001798.1 + 6800 0.8 0.645175
Target:  5'- gGGAAcgGGAGGACCGAGAGGCgGCCa -3'
miRNA:   3'- -CCUUcgCCUUUUGGUUUUUCGgCGGg -5'
5188 3' -48.7 NC_001798.1 + 7082 0.67 0.997745
Target:  5'- uGggGCGGgcAGCCGAGAccuuuccuuaaaaGGCaC-CCCa -3'
miRNA:   3'- cCuuCGCCuuUUGGUUUU-------------UCG-GcGGG- -5'
5188 3' -48.7 NC_001798.1 + 7142 0.66 0.999039
Target:  5'- aGGAGCGGAcacgcuugAagggcacucgcuuccGACCGAcgGGCC-CCCg -3'
miRNA:   3'- cCUUCGCCU--------U---------------UUGGUUuuUCGGcGGG- -5'
5188 3' -48.7 NC_001798.1 + 7256 0.73 0.921611
Target:  5'- ---uGCGGcccucucgaucccGAAGCCAucuGAAGCCGUCCg -3'
miRNA:   3'- ccuuCGCC-------------UUUUGGUu--UUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 8562 0.69 0.990943
Target:  5'- aGggGUGGggG-CgAAGAAGgCGCCa -3'
miRNA:   3'- cCuuCGCCuuUuGgUUUUUCgGCGGg -5'
5188 3' -48.7 NC_001798.1 + 8604 0.66 0.998732
Target:  5'- --uAGCGGAGcAGCCAcaccAAAAG-UGCCCc -3'
miRNA:   3'- ccuUCGCCUU-UUGGU----UUUUCgGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 8885 0.67 0.998464
Target:  5'- aGGGcgcuGGCGGAGGGCgGAGgcgaaggugGGGuuGCCg -3'
miRNA:   3'- -CCU----UCGCCUUUUGgUUU---------UUCggCGGg -5'
5188 3' -48.7 NC_001798.1 + 9091 0.78 0.723365
Target:  5'- cGgcGUGGAGGGCCAcgggaaaggccgcggGGGAGCCGCCg -3'
miRNA:   3'- cCuuCGCCUUUUGGU---------------UUUUCGGCGGg -5'
5188 3' -48.7 NC_001798.1 + 9602 0.75 0.859873
Target:  5'- cGGAcAGCccgaGGGcgGCCAGcaacAGGGCCGCCCc -3'
miRNA:   3'- -CCU-UCG----CCUuuUGGUU----UUUCGGCGGG- -5'
5188 3' -48.7 NC_001798.1 + 9860 0.67 0.996871
Target:  5'- gGGAGGCgugcuGGAAuuCCAGauugacggugGAGGCCaGCCa -3'
miRNA:   3'- -CCUUCG-----CCUUuuGGUU----------UUUCGG-CGGg -5'
5188 3' -48.7 NC_001798.1 + 9965 0.7 0.980537
Target:  5'- uGGAAcagccggcguacuGCGGAccGCCAGGcGGUaCGCCCa -3'
miRNA:   3'- -CCUU-------------CGCCUuuUGGUUUuUCG-GCGGG- -5'
5188 3' -48.7 NC_001798.1 + 10323 0.67 0.998464
Target:  5'- uGGggGgGGAAcGCUGAccGGCgugcguucgucaCGCCCg -3'
miRNA:   3'- -CCuuCgCCUUuUGGUUuuUCG------------GCGGG- -5'
5188 3' -48.7 NC_001798.1 + 10406 0.69 0.992552
Target:  5'- aGggGCGGGcuccacGACCAGAAccaccgacgccacuuGGCgCGCCUc -3'
miRNA:   3'- cCuuCGCCUu-----UUGGUUUU---------------UCG-GCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.