Results 61 - 80 of 323 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 36970 | 0.66 | 0.434313 |
Target: 5'- gGAGaugauaGCGugauugacGCCCCGCCCCCauacgagagUGugGCCGg -3' miRNA: 3'- gCUC------CGC--------UGGGGCGGGGG---------GCugCGGU- -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 47606 | 0.66 | 0.434313 |
Target: 5'- aCGAGGagcuguacuaUGGCCCgGUCuCCCCGGCGgacCCAg -3' miRNA: 3'- -GCUCC----------GCUGGGgCGG-GGGGCUGC---GGU- -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 127851 | 0.66 | 0.434313 |
Target: 5'- -uGGGCcccGCCCCGCCCCaCCc-CGCCc -3' miRNA: 3'- gcUCCGc--UGGGGCGGGG-GGcuGCGGu -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 131346 | 0.66 | 0.434313 |
Target: 5'- cCGGGcGCGACgUCGgCgCCCGGCGCg- -3' miRNA: 3'- -GCUC-CGCUGgGGCgGgGGGCUGCGgu -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 135909 | 0.66 | 0.433487 |
Target: 5'- gCGAGGCcgacGACCCCcuGCCCCaaaCGgccuuccgcggagGCGCCc -3' miRNA: 3'- -GCUCCG----CUGGGG--CGGGGg--GC-------------UGCGGu -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 85025 | 0.66 | 0.433487 |
Target: 5'- --uGGCGACgUCCGCCCCgggggugCCGucgaGCGCCGc -3' miRNA: 3'- gcuCCGCUG-GGGCGGGG-------GGC----UGCGGU- -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 105212 | 0.66 | 0.433487 |
Target: 5'- gCGAcGGCGcuGCCCCGuccgcagcgcccuCCCCCCu-CGCCu -3' miRNA: 3'- -GCU-CCGC--UGGGGC-------------GGGGGGcuGCGGu -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 30850 | 0.66 | 0.433487 |
Target: 5'- uGGGGgGacacacgguccgcGCCCUGucgcccacCCCCCCGugGCCc -3' miRNA: 3'- gCUCCgC-------------UGGGGC--------GGGGGGCugCGGu -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 96889 | 0.67 | 0.426088 |
Target: 5'- aCGAGcuGCGACgguaCCUGCCCCaCGcCGCCGg -3' miRNA: 3'- -GCUC--CGCUG----GGGCGGGGgGCuGCGGU- -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 129032 | 0.67 | 0.426088 |
Target: 5'- -aAGGCGauGCUCCGCCCCggauCgGGCGCUg -3' miRNA: 3'- gcUCCGC--UGGGGCGGGG----GgCUGCGGu -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 25130 | 0.67 | 0.426088 |
Target: 5'- gCGcGGaCGccCCCCGCCCCgCGGcCGCCc -3' miRNA: 3'- -GCuCC-GCu-GGGGCGGGGgGCU-GCGGu -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 114832 | 0.67 | 0.426088 |
Target: 5'- cCGuGGCcguGCCCCGCCUgaCGcACGCCGa -3' miRNA: 3'- -GCuCCGc--UGGGGCGGGggGC-UGCGGU- -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 150808 | 0.67 | 0.42527 |
Target: 5'- aCGGGGCG-CCgCCGCUgcugcugCUCCGcgggGCGCCAg -3' miRNA: 3'- -GCUCCGCuGG-GGCGG-------GGGGC----UGCGGU- -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 59687 | 0.67 | 0.42527 |
Target: 5'- gGGGGCGGCgggcacgCCCGUCUUCgGGCGCUu -3' miRNA: 3'- gCUCCGCUG-------GGGCGGGGGgCUGCGGu -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 139292 | 0.67 | 0.417955 |
Target: 5'- gGGGGCGcauagcGCCgcgucgCCGCCCCgcguccgcaucgCCGGCGCCc -3' miRNA: 3'- gCUCCGC------UGG------GGCGGGG------------GGCUGCGGu -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 30568 | 0.67 | 0.417955 |
Target: 5'- aCGAGaucGCCCCGCCCCUgCGcUGCCAg -3' miRNA: 3'- -GCUCcgcUGGGGCGGGGG-GCuGCGGU- -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 46409 | 0.67 | 0.417955 |
Target: 5'- --cGGCagGGCCaCCGcCCCCCCGGCgGUCGc -3' miRNA: 3'- gcuCCG--CUGG-GGC-GGGGGGCUG-CGGU- -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 83872 | 0.67 | 0.417955 |
Target: 5'- cCGAGGCGGcgacCCCCGgC-CCgGGCGCUc -3' miRNA: 3'- -GCUCCGCU----GGGGCgGgGGgCUGCGGu -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 127130 | 0.67 | 0.417955 |
Target: 5'- gGGGGUuuggGAUgCCCGCCgCCCUGACcacgGCCAa -3' miRNA: 3'- gCUCCG----CUG-GGGCGG-GGGGCUG----CGGU- -5' |
|||||||
5188 | 5' | -66.8 | NC_001798.1 | + | 85713 | 0.67 | 0.417955 |
Target: 5'- -cAGGcCGACgCCC-UCCCCgGGCGCCGc -3' miRNA: 3'- gcUCC-GCUG-GGGcGGGGGgCUGCGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home