miRNA display CGI


Results 41 - 60 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5188 5' -66.8 NC_001798.1 + 125347 0.66 0.459529
Target:  5'- uGuGGUcGCCCCcaaagucacGCCCCCUGaguuGCGCCGg -3'
miRNA:   3'- gCuCCGcUGGGG---------CGGGGGGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 128363 0.66 0.459529
Target:  5'- aCGAGGCGGCgaCGCaaaaCCaggCCGACuGCCAg -3'
miRNA:   3'- -GCUCCGCUGggGCGg---GG---GGCUG-CGGU- -5'
5188 5' -66.8 NC_001798.1 + 147913 0.66 0.459529
Target:  5'- gGGGGCaggcgcgggucgGGCCcguacgcccaCCGCCCCCaCG-CGCCGg -3'
miRNA:   3'- gCUCCG------------CUGG----------GGCGGGGG-GCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 145536 0.66 0.459529
Target:  5'- ---cGCGcCCCCGCCCggccgCCCGcgucGCGCCGg -3'
miRNA:   3'- gcucCGCuGGGGCGGG-----GGGC----UGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 29499 0.66 0.456972
Target:  5'- aCGGGGCcGCCCCGagagggggggauucCCUCCCucCGCCc -3'
miRNA:   3'- -GCUCCGcUGGGGC--------------GGGGGGcuGCGGu -5'
5188 5' -66.8 NC_001798.1 + 82801 0.66 0.454423
Target:  5'- cCGAGGCgcucGACCCCcUCCCaCCGGaaccgcauugcccccCGCCGa -3'
miRNA:   3'- -GCUCCG----CUGGGGcGGGG-GGCU---------------GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 117527 0.66 0.451036
Target:  5'- uGGGGcCGGCCCaGCCCcuCCCGgucuuuggcuGCGCCc -3'
miRNA:   3'- gCUCC-GCUGGGgCGGG--GGGC----------UGCGGu -5'
5188 5' -66.8 NC_001798.1 + 107077 0.66 0.451036
Target:  5'- gGAGGCuGugggcccgcaaGCCCCG-CCCCCGGC-CCu -3'
miRNA:   3'- gCUCCG-C-----------UGGGGCgGGGGGCUGcGGu -5'
5188 5' -66.8 NC_001798.1 + 21814 0.66 0.450192
Target:  5'- uCGGGGCGGagCCCGCgggaugacgcgggCCCCgggcagGGCGCCAg -3'
miRNA:   3'- -GCUCCGCUg-GGGCG-------------GGGGg-----CUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 13658 0.66 0.450192
Target:  5'- gGAGucccaccGCGACaacuagcagggCCGCCgUCCCGACGCCGg -3'
miRNA:   3'- gCUC-------CGCUGg----------GGCGG-GGGGCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 15529 0.66 0.445982
Target:  5'- gGAGGCgcugcugguguucguGugCCCGgCCCCgGGCGUUg -3'
miRNA:   3'- gCUCCG---------------CugGGGCgGGGGgCUGCGGu -5'
5188 5' -66.8 NC_001798.1 + 27518 0.66 0.44263
Target:  5'- gGGGGCG-CCCgcgggaaggcaGCCCCgCGGCGCgCGg -3'
miRNA:   3'- gCUCCGCuGGGg----------CGGGGgGCUGCG-GU- -5'
5188 5' -66.8 NC_001798.1 + 67570 0.66 0.44263
Target:  5'- gGGGGCGACCUCgGgCUCCCGGgGUUc -3'
miRNA:   3'- gCUCCGCUGGGG-CgGGGGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 148853 0.66 0.44263
Target:  5'- gGGGGCGGCuucucgugCCCGCCCCCCcucCuCCu -3'
miRNA:   3'- gCUCCGCUG--------GGGCGGGGGGcu-GcGGu -5'
5188 5' -66.8 NC_001798.1 + 149980 0.66 0.44263
Target:  5'- gGGGGCG-CggCGCCCgCgGACGCCGg -3'
miRNA:   3'- gCUCCGCuGggGCGGGgGgCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 28688 0.66 0.44263
Target:  5'- cCGAGGCggucaucgGACCgUGCCUggagCCCGAgGCCc -3'
miRNA:   3'- -GCUCCG--------CUGGgGCGGG----GGGCUgCGGu -5'
5188 5' -66.8 NC_001798.1 + 104295 0.66 0.440125
Target:  5'- --uGGCG-CCCgaguccaauccggaCGCCCCCCGAgcgauggccucCGCCGg -3'
miRNA:   3'- gcuCCGCuGGG--------------GCGGGGGGCU-----------GCGGU- -5'
5188 5' -66.8 NC_001798.1 + 58297 0.66 0.437629
Target:  5'- cCGGGGCGcgagggucugacacaGCUCCGUCaggCCCGcCGCCGc -3'
miRNA:   3'- -GCUCCGC---------------UGGGGCGGg--GGGCuGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 1874 0.66 0.437629
Target:  5'- uGAGGCGGCggucgcaggcgccggCCagcaGCCCCaggaacuccaCGGCGCCGg -3'
miRNA:   3'- gCUCCGCUG---------------GGg---CGGGGg---------GCUGCGGU- -5'
5188 5' -66.8 NC_001798.1 + 108642 0.66 0.435141
Target:  5'- aCGGGGCGACCgagaggcacccggaCgGCcgacgcaacgcgccgCCCCCGGgGCCGc -3'
miRNA:   3'- -GCUCCGCUGG--------------GgCG---------------GGGGGCUgCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.